GTDB files for Taxonomy build

[SoilRotifer (Mike Robeson)]

@biojack

My only concern was that tax file naming may be more valid or prepared for further processing ( like containing only two words on species level instead of full strain name or smth like this)

Ahh, gotcha!

Well, you can use rescript edit-taxonomy ... to fix those cases.

Here is one example use case:

rescript edit-taxonomy error

Hi @Anuka, I assume your intent is to replace this entire string: p__BRC1; c__PRR-11; o__; f__; g__; s__ with this entire string: p__ Incertae sedis; c__ Candidate; o__; f__; g__ Candidatus Sumerlaea; s__, If so, then you need to place each in quotes as follows: qiime rescript edit-taxonomy --i-taxonomy taxonomy.qza \ --p-search-strings 'p__BRC1; c__PRR-11; o__; f__; g__; s__' \ --p-replacements-strings 'p__Incertae sedis; c__Candidate; o__; f__; g_Candidatus Sumerlaea; s__chit…