Hello @Nicholas_Bokulich,
Thank you very much for your reply and time. And also for reassigning the topic to the right category.
About your suggestion regarding the taxonomy column., I thought that it is was meant to be left empty as the FunGuild script should be the one performing the assignment.
If this is not the case, then the table should be obtained by following this type of procedure right?
But in order to obtain a taxonomy artifact, a classifier needs to be trained and the used. However, in my case, since the data is fungal DNA, the database for training is UNITE, and I don't have the necessary resources to train it myself. I've searched for a pretrained calssifier, and this was the most recent version I could find. But it was made using QIIME2 2019.1 version. I've been trying to install that version in a seperate environment, but it hasn't woked out well.
So I when looking for ways to avoid this issue, I thought I could use FUNGuild to perform the assignment, therefore not needing to fill out the taxonomy column, just it having to be introduced as a mandatory header.
I am sorry to have poured all of this on you, especially since you mentioned you haven't worked with FUNGuild before. I just thought maybe someone would see this message and be able to reply.
Thank you in advance!