Exporting qiime2 biom files with metadata?

[jwdebelius (Justine Debelius)]

Hi @ben and @msport469,

Im going to bump this over to the "other tools" category, since it deals with biom-specifically and not a QIIME2 plug in, but also maybe look at this, it at least specifies export with metadata.

How to combine Feature Table with the taxonomy class

Hallo everyone! I have convert the feature table which form with qiime2.2019.7 from .biom to .txt by biom, like this:[feature%20table] Now I want to use STAMP to analyze my data. But the data that STAMP needs must be like this [stamp-otu] that include taxonomy class and the form must be strictly hierarchy. Please tell me how to get the right form data that STAMP could use. Thanks very much!!!

Or, if you're so inclined, the python API isn't bad for this.

Best,
Justine