Error: Must request at least one colour from a hue palette

[ecg (Ele)]

Hi, I have just run songbird and got the outputs,
I would like to plot the biplot in R but I am missing something to do with the colour? I have read that that can be due to the group being full of NAs (which it isn't?)or being character, which it is.

regression_biplot <- read_qza('~/Documents/songbird_test/regression-biplot.qza')
regression_biplot <- read_qza('~/Documents/songbird_test/regression-biplot.qza')
regression_Eigvals<- regression_biplot$data$Eigvals
regression_variance<- regression_biplot$data$ProportionExplained 
percentVar <- round(regression_variance*100)


regression_biplot$data$Vectors %>%
  select(SampleID, PC1, PC2) %>%
  left_join(metadata) %>%
  ggplot(aes(x=PC1, y=PC2, color= `group`)) +
  geom_point(alpha=0.9) +
  theme_q2r() +
  scale_shape_manual(values=c(16,1), name="group") +
  scale_color_discrete(name="group")+ ggtitle("Regression biplot") + 
     theme(plot.title = element_text(lineheight=.8, face="bold", size=12))

Error: Must request at least one colour from a hue palette.

My group column is a character (T or P)

[jwdebelius (Justine Debelius)]

Hi @ecg,

I don’t have an R answer, but I re-categorized this as “other bioinformatics tools” because it seems to be a question about R rather than qiime2.