Analyze bacterial sequence with customized reference

I have generate bacteria sequence reads not based on 16S or ITS. It is the purpose to target a bacteria genus with the customized the reference database.

How do I analyze it in QIIME2? How do I develop the reference database with the format compatible to the QIIME2?


Hi @yu_guoqin,

Check out some of the other compatible reference databases here — the raw sequence fasta and taxonomy files are good examples of the expected formats.

I hope that helps!

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