I have generate bacteria sequence reads not based on 16S or ITS. It is the purpose to target a bacteria genus with the customized the reference database.
How do I analyze it in QIIME2? How do I develop the reference database with the format compatible to the QIIME2?
Check out some of the other compatible reference databases here — the raw sequence fasta and taxonomy files are good examples of the expected formats.
I hope that helps!
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