Dear Colleagues
For the image below of interactive quality what should be ideal trim and truncate.
I personally think
--p-trim-left-r 0
--p-trunc-len-f 105
--p-trunc-len-r 28
Dear @drmusk,
Please see this tutorial for guidance on choosing appropriate trimming parameters. This tutorial gives further guidance on additional considerations for paired-end read data (as it appears you have).