What can I do with forward and reverse file [Software developer no bio-background]

(Nicolas Bourré) #1

Hey guys,

I’m a software developer who has been put on a project to learn about bioinfomatics. I’ve read the tutorial, but it’s like chinese for me.

So I have two files with these names

  • MI.M03992_0107.001.BioOHT_1rc.SCI017689_PCR2-1-XXXXX_R1.fastq.gz
  • MI.M03992_0107.001.BioOHT_1rc.SCI017689_PCR2-1-XXXXX_R2.fastq.gz

So I need to create a table with the species found in these files with a percentage of presence in each sequencing.

What is the pipeline I need to follow?

Thanks

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(Nicholas Bokulich) split this topic #2

An off-topic reply has been merged into an existing topic: How to import paired-end fastq files

Please keep replies on-topic in the future.

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(Nicholas Bokulich) closed #3
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