I'm using your wonderful new GG2 plugin and I noticed that Faith PD values derived from the GG2 tree(2022.10.phylogeny.asv.nwk.qza) are much higher than than I'm used to. For example in a dataset of human stool 150nt V4 16S samples that I previously calculated with fragment-insertion I see Faith PD values of ~5-50, the same dataset used with GG2 is showing me values of 4000-14000. While I expected differences with the updated GG2 tree, I'm having trouble understanding how the values can be this high! Just wanted to see if this merits a closer look on my part to see if some mistakes were made or this is expected?
Thanks in advance!