I’m trying to run the diversity core metrics package on my data and when I run this command:
qiime diversity beta-group-significance --i-distance-matrix 56900-stomp/unweighted_unifrac_distance_matrix.qza --m-metadata-file stomp-metadata.csv --m-metadata-category Treatment --o-visualization 56900-stomp/unweighted-unifrac-treatment-sig.qzv
It gives my a n= more samples than what I have and don’t know why. Can someone explain me what it does? I already did other PERMANOVAs on my data in R and never bumped into this numbers.