As far as I can tell, there’s no way to import a tsv file directly as a FeatureTable (eg., OTU abundances --> FeatureTable[Frequency]). It seems like that is currently only possible by: tsv --> biom --> qiime tools import --type FeatureTable[Frequency]. It would be great to add tsv --> FeatureTable to qiime tools import.
1 Like
Thanks @nick-youngblut - this is on our radar! Not sure when this will land, but stay tuned! 