Hi, I am having the same issue as described in this thread when installing RESCRIPt:
I sucessfully installed it inside my qiime2-2021.4 environment using the commands described on the github page (but with --user flag because I am using a remote computing cluster):
pip install git+https://github.com/bokulich-lab/RESCRIPt.git --user
The message I got after reads:
Cloning https://github.com/bokulich-lab/RESCRIPt.git to /tmp/pip-req-build-06q0ww91
Building wheels for collected packages: rescript
Running setup.py bdist_wheel for rescript ... done
Stored in directory: /tmp/pip-ephem-wheel-cache-72hlz2kf/wheels/c8/65/fa/4a3cf80279607ababb41e29474cdbe4728564941f215c8bdb0
Successfully built rescript
distributed 1.21.8 requires msgpack, which is not installed.
Installing collected packages: rescript
Successfully installed rescript-2021.8.0.dev0+3.g1ce2142
You are using pip version 10.0.1, however version 21.1.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
However when I try run
qiime rescript I get ther error:
Error: QIIME 2 has no plugin/command named 'rescript'.
From the post linked about I know I need to "add the package files to the $PATH variable for the active environment" I'm using. I am unsure how to do this and would appreciate any guidance! Thank you