I am wondering if there is a tool similar to Atom or Virtual Code Studio that is specific to QIIME2 codes. I know QIIME2 has been written in Python but it does not necessary follow Python rules so we cannot set Python for storing and debugging QIIME2 codes. Are there any tools available for this?
I’ve also been playing with running qiime2 with the CLI-interface in snakemake. I particularly like it when I have multiple sequencing runs I want to combine, because then I just have to make a per-run manifest, and run a single command.