Hi, I am looking into how to do a taxonomic assignment on my 28S data. It is hard to find any information on this as most people use 16S or 18S. I thought I could try qiime feature-classifier classify-consensus-blast and use the pre formatted silva database in the resources but it looks like that is only for 16S and 18S. How would I make a database for 28S. Is Silva the best database to use for 28S or would blast be better? I am also not sure whether it would be better to use sklearn and train classifier in this case.
Any thoughts on this would be greatly appreciated.