Hi @jakebaquiran! Take a look at this forum post, where I show how to export a feature table and taxonomy data from QIIME 2 and import that data into a .biom file (e.g. for use with QIIME 1 or another tool).
We don’t support the biom or QIIME 1 tools on this forum, so we’ll be limited in our ability to help you past exporting your data from QIIME 2. If you have further questions about those tools, you should post to either the QIIME 1 Forum or the biom-format issue tracker. Thanks!