It is my first time to use QIIME2. As I create OTU table with the taxonomy metadata and feature counts of my samples in QIIME1, the taxon names (each letter) became separated by semicolons (please see attached file) when I convert the biom file into tsv file.
JBfeature-table_withtaxonomy.tsv (2.3 MB)
I used this command:
biom add-metadata -i denoisetable/feature-table.biom -o feature-table_with taxonomy.biom --observation-metadata-fp taxonomy97/taxonomy.tsv --sc-separated taxonomy --float-fields Confidence
At first, I thought it was because of --sc-separated, but I also tried not to include --sc-separated but the result is the same.
What should I do to fix this thing? Thank you very much in advance.