Hello everybody!
I'm sorry I bring this topic alive again. I'm trying to follow steps indicating here, but I'm receiving still the same error mesage:
line 109
return int(a[u] > b[u])*2-1
^
TabError: inconsistent use of tabs and spaces in indentation
File "/.conda/envs/lefse/bin/run_lefse.py", line 25
parser.add_argument('-r',dest="rank_tec", metavar='str', choices=['lda','svm'], type=str, default='lda',
About my LEfSe Conda environment, it looks like this:
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
_r-mutex 1.0.0 anacondar_1 r
backports 1.1 pyhd3eb1b0_0
backports.functools_lru_cache 1.6.4 pyhd3eb1b0_0
backports_abc 0.5 py_1
binutils_impl_linux-64 2.31.1 h6176602_1
binutils_linux-64 2.31.1 h6176602_9
biom-format 2.1.7 py27_0 bioconda
blas 1.0 mkl
bwidget 1.9.16 h9eba36c_0
bzip2 1.0.8 h5eee18b_5
c-ares 1.19.1 h5eee18b_0
ca-certificates 2023.12.12 h06a4308_0
cairo 1.14.12 h8948797_3
certifi 2020.6.20 pyhd3eb1b0_3
click 7.1.2 pyhd3eb1b0_0
curl 7.76.1 h979ede3_1 conda-forge
cycler 0.10.0 py27_0
dbus 1.13.18 hb2f20db_0
expat 2.5.0 h6a678d5_0
fontconfig 2.14.1 h52c9d5c_1
freetype 2.12.1 h4a9f257_0
fribidi 1.0.10 h7b6447c_0
functools32 3.2.3.2 py_3 conda-forge
future 0.18.2 py27_0
futures 3.3.0 py27h8c360ce_1 conda-forge
gcc_impl_linux-64 7.3.0 habb00fd_1
gcc_linux-64 7.3.0 h553295d_9
gfortran_impl_linux-64 7.3.0 hdf63c60_1
gfortran_linux-64 7.3.0 h553295d_9
glib 2.63.1 h5a9c865_0
graphite2 1.3.14 h295c915_1
gsl 2.4 h14c3975_4
gst-plugins-base 1.14.0 hbbd80ab_1
gstreamer 1.14.0 hb453b48_1
gxx_impl_linux-64 7.3.0 hdf63c60_1
gxx_linux-64 7.3.0 h553295d_9
h5py 2.9.0 py27h7918eee_0
harfbuzz 1.8.8 hffaf4a1_0
hdf5 1.10.4 hb1b8bf9_0
icu 58.2 he6710b0_3
intel-openmp 2022.1.0 h9e868ea_3769
jpeg 9e h0b41bf4_3 conda-forge
kiwisolver 1.1.0 py27he6710b0_0
krb5 1.17.2 h926e7f8_0 conda-forge
lefse 1.0.8.post1 py27_1 bioconda
lerc 3.0 h295c915_0
libcurl 7.76.1 hc4aaa36_1 conda-forge
libdeflate 1.17 h5eee18b_1
libedit 3.1.20230828 h5eee18b_0
libev 4.33 h7f8727e_1
libffi 3.2.1 he1b5a44_1007 conda-forge
libgcc-ng 13.2.0 h807b86a_5 conda-forge
libgfortran-ng 7.5.0 h14aa051_20 conda-forge
libgfortran4 7.5.0 h14aa051_20 conda-forge
libgomp 13.2.0 h807b86a_5 conda-forge
libnghttp2 1.52.0 ha637b67_1
libpng 1.6.39 h5eee18b_0
libsqlite 3.45.2 h2797004_0 conda-forge
libssh2 1.10.0 h37d81fd_2
libstdcxx-ng 13.2.0 h7e041cc_5 conda-forge
libtiff 4.5.1 h6a678d5_0
libuuid 1.41.5 h5eee18b_0
libwebp-base 1.3.2 h5eee18b_0
libxcb 1.15 h7f8727e_0
libxml2 2.9.14 h74e7548_0
libzlib 1.2.13 hd590300_5 conda-forge
linecache2 1.0.0 py_1
lz4-c 1.9.4 h6a678d5_0
make 4.3 hd18ef5c_1 conda-forge
matplotlib 2.2.3 py27hb69df0a_0
mkl 2020.2 256
mkl-service 2.3.0 py27he904b0f_0
mkl_fft 1.0.15 py27ha843d7b_0
mkl_random 1.1.0 py27hd6b4f25_0
ncurses 6.4 h59595ed_2 conda-forge
numpy 1.16.6 py27hbc911f0_0
numpy-base 1.16.6 py27hde5b4d6_0
openssl 1.1.1w h7f8727e_0
pandas 0.24.2 py27he6710b0_0
pango 1.42.4 h049681c_0
pcre 8.45 h295c915_0
pip 20.1.1 pyh9f0ad1d_0 conda-forge
pixman 0.40.0 h7f8727e_1
pyparsing 2.4.7 pyhd3eb1b0_0
pyqi 0.3.2 py_0 conda-forge
pyqt 5.9.2 py27h05f1152_2
python 2.7.15 h5a48372_1009 conda-forge
python-dateutil 2.8.1 pyhd3eb1b0_0
python_abi 2.7 1_cp27mu conda-forge
pytz 2020.1 py_0
qt 5.9.7 h5867ecd_1
r-base 3.5.3 h26b83e4_0
r-codetools 0.2_16 r35h6115d3f_1001 conda-forge
r-coin 1.3_1 r35hcdcec82_0 conda-forge
r-lattice 0.20_41 r35hcdcec82_1 conda-forge
r-libcoin 1.0_5 r35hcdcec82_0 conda-forge
r-mass 7.3_51.6 r35hcdcec82_1 conda-forge
r-matrix 1.2_18 r35hcdcec82_0 conda-forge
r-matrixstats 0.56.0 r35hcdcec82_0 conda-forge
r-modeltools 0.2_23 r35h6115d3f_0 conda-forge
r-multcomp 1.4_13 r35h6115d3f_0 conda-forge
r-mvtnorm 1.1_0 r35h9bbef5b_0 conda-forge
r-sandwich 2.5_1 r35h6115d3f_1 conda-forge
r-survival 3.1_12 r35hcdcec82_0 conda-forge
r-th.data 1.0_10 r35h6115d3f_1 conda-forge
r-zoo 1.8_7 r35hcdcec82_0 conda-forge
readline 8.2 h8228510_1 conda-forge
rpy2 2.8.6 py27r35hd767a1f_2 conda-forge
scipy 1.2.1 py27h7c811a0_0
setuptools 44.0.0 py27_0 conda-forge
singledispatch 3.7.0 pyhd3eb1b0_1001
sip 4.19.8 py27hf484d3e_0
six 1.16.0 pyhd3eb1b0_1
sqlite 3.33.0 h62c20be_0
subprocess32 3.5.4 py27h7b6447c_0
tk 8.6.13 noxft_h4845f30_101 conda-forge
tktable 2.10 h3d55465_1
tornado 5.1.1 py27h7b6447c_0
traceback2 1.4.0 py27_0
unittest2 1.1.0 py27_0
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
xz 5.4.6 h5eee18b_0
zlib 1.2.13 hd590300_5 conda-forge
zstd 1.5.5 hc292b87_0
Any suggestions? Please @sbslee
