I was just wondering if there was an equivalent to split_otu_table_by_taxonomy.py in Qiime2?
I’d like to split my 16S table into Bacteria, Archaea and Unknown which was possible using this script.
The closest I can see is:
qiime taxa filter-table --p-include Bacteria
and then do this for each kingdom I’m interested in. Is this the best way?
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