Split_otu_table_by_taxonomy.py equivalent in Qiime 2


#1

Hi,

I was just wondering if there was an equivalent to split_otu_table_by_taxonomy.py in Qiime2?

I’d like to split my 16S table into Bacteria, Archaea and Unknown which was possible using this script.

The closest I can see is:

qiime taxa filter-table --p-include Bacteria

and then do this for each kingdom I’m interested in. Is this the best way?

Many thanks

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(Justine) #2

Hi @SarahH,

That would definitely be the best approach in my opinion!

Best,
Justine