Slight typo in Atacama tutorial

willwcb · October 9, 2018, 5:07pm

In the Atacama tutorials, during the demux step, it says --o-per-sample-sequences demux

I think this should say --o-per-sample-sequences demux.qza

I'm also curious, in this forum post Demultiplexing and Trimming Adapters from Reads with q2-cutadapt it was said that the tutorial would be updated in the coming weeks, is this still the most updated version?

Thank you

ebolyen · October 9, 2018, 5:14pm

Hey @willwcb,

Good catch! In case you or anyone else is interested, this would make a great first PR.

This is the source file:

github.com

qiime2/docs/blob/master/source/tutorials/atacama-soils.rst

"Atacama soil microbiome" tutorial
==================================

.. note:: This guide assumes you have installed QIIME 2 using one of the
   procedures in the :doc:`install documents <../install/index>` and completed
   the :doc:`moving pictures tutorial <moving-pictures>`.

This tutorial is designed to serve two purposes. First, it illustrates the
initial processing steps of paired-end read analysis, up to the point where
the analysis steps are identical to single-end read analysis. This includes
the importing, demultiplexing, and denoising steps, and results in a feature
table and the associated feature sequences. Second, this is intended to be a
self-guided exercise that could be run after :doc:`the moving pictures
tutorial <moving-pictures>` to gain more experience with QIIME 2. For this
exercise, we provide some questions that can be used to guide your analysis,
but do not provide commands that will allow you to address each. Instead, you
should apply the commands that you learned in :doc:`the moving pictures
tutorial <moving-pictures>`.

In this tutorial you'll use QIIME 2 to perform an analysis of soil samples

This file has been truncated. show original

It's a simple enough change, someone could edit and submit a PR via their browser if they didn't have a development environment set up.

I'm afraid so.