Simple import for fastq demultiplexed merged seqs

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Hello,

I simply want to import simple fastq demultiplexed and merged samples but I don’t see any way to do it on the tutorials.

Can anyone help ?

2

Hi @leob44,

I haven’t tried it, but maybe you could try importing them as single end sequences. They can then be clustered or deblurred, but not run through dada2.

Best,
Justine

3

Thank you for the reply. Indeed it worked using “SampleData[SequencesWithQuality]” coupled to a manifest file !

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