qqqqa
July 1, 2021, 9:24am
1
Plugin error from feature-classifier:
The scikit-learn version (0.23.1) used to generate this artifact does not match the current version of scikit-learn installed (0.24.2). Please retrain your classifier for your current deployment to prevent data-corruption errors.
Debug info has been saved to /tmp/qiime2-q2cli-err-953fotk6.log
my qiime2 is2021.4
What can I do to make it work ?
Hi @qqqqa , welcome to :qiime2:!
If you search the forum you'll find that this has been addressed on several occasions. Please see the following threads to start:
Hi @Irshad !
The scikit-learn version (0.21.2) used to generate this artifact does not match the current version of scikit-learn installed (0.20.2).
Scikit-learn requires you to use a classifier that was trained with the same version as scikit-learn that you're using to run your command. This protects your analysis from unexpected behavior. If you are using a pre-trained classifier from the QIIME 2 docs , make sure that the version of QIIME 2 you're using is the same as the version of the docs…
Hi,
I try to use silva classifier as provided in the “Taxonomy classifiers for use with q2-feature-classifier ” tutorial. when i run the command:
qiime feature-classifier classify-sklearn --i-classifier silva-119-99-515-806-nb-classifier.qza --i-reads rep-seqs.qza --o-classification taxonomy-silva.qza
I get this error:
Plugin error from feature-classifier:
The scikit-learn version (0.19.1) used to generate this artifact does not match the current version of scikit-learn installed (0.20.2). P…
I am having an issue using Silva to classify my reads. I used the following command
qiime feature-classifier classify-sklearn --i-classifier silva-132-99-515-806-nb-classifier.qza --i-reads allreps_rep-seq.qza --o-classification allrepstaxonomy.qza
And I received this error
The scikit-learn version (0.21.2) used to generate this artifact does not match the current version of scikit-learn installed (0.22.1).
I'm guessing I need a newer version of Silva but I can't find it on their archive, an…
-Mike
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system
(system)
Closed
August 1, 2021, 8:17pm
3
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