Correct. You can follow the same approach used to remove chimeric sequences as outlined here.
For example, if you want to keep the features in your feature table based on your sequence length criteria, you can just feed in your representative sequence file as a metadata file like so:
qiime feature-table filter-features \
--i-table feature-table.qza \
--m-metadata-file sequences-to-retain.qza \
--o-filtered-table feature-table-retained.qza