filtering feature table based on representative sequences

Hi! I am utilizing qiime quality-control exclude-seqs to filter my denoised representative-sequences.qza file to only include sequences that are similar enough to my reference alignment. I would like to filter my feature table to only include these seqeunces as well. I don't see an option in exlude-seqs to accomplish this, or in qiime feature-table filter-features. Any help is appreciated, thanks!

HI @anna-schrecengost,

The post linked below is a good example of how you can filter your feature-table based on your sequences. That is, your sequence file is the metadata file.

You can also toggle the --p-exclude-ids / --p-no-exclude-ids option.


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Thank you @SoilRotifer!

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