Quality filter paired end fastq's

[jairideout (Jai Ram Rideout)]

The QIIME 2 2017.11 release has expanded support for analyzing paired end reads! See the paired end reads community tutorial for more details.

@ebolyen

We’ve also got some plans to improve trimming/removal of non-biological sequence, so there will probably be a plugin in the near future to more directly address this.

We'll follow up here again when we have more direct support for trimming!