Hi everyone,
I went through qiime2 documents to learn about basic qiime2 commands. Since, I never used commandline before, i struggle to import files. In addition, I am getting ION TORRENT files from my collaborator which are difficult to work with qiime2. Hence, I started using qiime2 studio. Studio is simple and intuitive. I hope qiime2 developer team will make it more efficient in the future.
Having said that I was analysing moving picture tutorial data to compare result between studio and q2cli version. I found that studio results are different for dada2 analysis and beyond than q2cli. Why is it so? Am I doing something wrong? I am uploading table from dada2 analysis in studio (1st file) and q2cli (2nd file) for suggestion. table.qzv (350.7 KB) table.qzv (350.7 KB)
Hi @Sky23 --- thanks for sharing new QZVs (the first ones you sent were identical).
The explanation is simple, and has nothing to do with q2cli vs q2studio. The explanation is this:
You used two different versions of q2-dada2 (2019.1 vs 2019.7), which, uses two different versions of DADA2. These produced slightly different ASV results, but should more-or-less be the same.
thank you so much mathew. Now it make sense.
I wish qiime2 studio has the same capabilities as q2cli in the future.
Studio is really a game changer for non-bioinformatics person like me.