QIIME2 on Docker step by step?

[colinbrislawn (Colin J Brislawn)]

Hello @Moh,

Welcome to the forums!

First, here's how you install Qiime 2 inside a Docker container:

Installing QIIME 2 using Docker — QIIME 2 2023.5.1 documentation

@Moh

video/handout

There's something even better! A step-by-step tutorial by @.thermokarst that shows you how to run the Moving-Pictures tutorial from within the docker container created above!

Running The Moving Pictures Tutorial In Docker (2018.11)

Okay, so you have followed the official install guide for getting QIIME 2 up and running in Docker.... now what?! Using the Moving Pictures Tutorial (2018.11) as a guide (we will just present commands here, please see the source tutorial for more detailed discussion) - we have two main options for running commands: Option A - Single container Option B - One container per command Option A - Single Container docker run --rm -it \ -u $(id -u):$(id -g) \ -v $(pwd):/data \ qiime2/cor…

Let us know if you have any questions about how to set this up!

Colin