I installed qiime2 on Mac, activated and checked the installation with qiime--help, everything is fine. however, when I running command, such as_
_ join_paired_ends.py -i $PWD/R1Index.fastq, -r $PWD/R1Index.fastq, -o $PWD/Barcode.fastq
it showed: -bash: join_paired_ends.py: command not found
Could you please let me know what’s run? Thanks a lot!
Hi @savan - join_paired_ends.py is not a QIIME 2 command, which is why this is failing for you. Please take a look at docs.qiime2.org to get started with QIIME 2. Thanks!
Hi Matthew, I did follow it. For example, when I follow the 454 Overview Tutoria, 454 Overview Tutoria,
turns out: -bash: validate_mapping_file.py: command not found.