Hello, I'm trying to install QIIME2 2023.5 on Linux using conda by following these steps:
wget https://data.qiime2.org/distro/core/qiime2-2023.5-py38-linux-conda.yml conda env create -n qiime2-2023.5 --file qiime2-2023.5-py38-linux-conda.yml
The conda environment is created and I can see it when I run "conda info --envs". However, attempting to activate it using
conda activate qiime2-2023.5
gave the following error:
QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. Illegal instruction (core dumped)
This error seems to be occurring when I install other versions too such as 2023.2, but I am able to get 2022.2 working with no problems.
I am not using a virtual machine and here are the specs after running "uname -a":
Linux labservername 4.15.0-202-generic #213-Ubuntu SMP Thu Jan 5 19:19:12 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Running "lscpu" gives:
Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 16 On-line CPU(s) list: 0-15 Thread(s) per core: 2 Core(s) per socket: 4 Socket(s): 2 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 26 Model name: Intel(R) Xeon(R) CPU X5570 @ 2.93GHz Stepping: 5 CPU MHz: 1596.206 CPU max MHz: 3059.0000 CPU min MHz: 1596.0000 BogoMIPS: 5852.43 Virtualization: VT-x L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 8192K NUMA node0 CPU(s): 0-15 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts nopl xtopology nonstop_tsc cpuid aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm pti ssbd ibrs ibpb stibp tpr_shadow vnmi flexpriority ept vpid dtherm ida flush_l1d
I also found the following post but I'm not sure if it's related: https://forum.qiime2.org/t/qiime-is-caching-your-current-deployment-illegal-instruction-core-dumped/26028.
I ran the debugging script mentioned inside and I've attached the output.
output.txt (226.6 KB)
Could someone please give me some insight as to what's happening? Thanks!