qiime feature-classifier extract-reads will trim the primer sequence out?

[ranxx005 (Rachel Ran)]

I am training my silva classifier, when I provide the primer sequences, will "qiime feature-classifier extract-reads" trim the primers sequences out in the output ( just extract the region between the two primers)? my rep-seqs in my real data does not have primer sequence.Thank you!

[Nicholas_Bokulich]

Yes! It will trim off the primers.

@ranxx005

my rep-seqs in my real data does not have primer sequence

Perfect!

Good luck!