Hi, I had great fun reading the new q2book. Thanks for this fantastic addition to the qiime2 environment.
https://gregcaporaso.github.io/q2book/front-matter/preface.html
I know it is still work in progress. Nevertheless, I think it still makes sense to collect already ideas and make suggestions what could be improved. From my point of view there should be a separate chapter on the compositional nature of NGS datasets, which should/could cover the following topics:
- Frontiers | Microbiome Datasets Are Compositional: And This Is Not Optional | Microbiology
- Microbiome differential abundance methods produce different results across 38 datasets | Nature Communications
This part of the q2book could also be an obvious source to link additional q2-plugins from the community...