Hello,
I am trying to run q2-SCNIC. I installed it on Qiime 2 using the commands:
a) pip install scnic and
b) pip install git+https://github.com/lozuponelab/q2-SCNIC.git
Collecting git+https://github.com/lozuponelab/q2-SCNIC.git
The outcome was: Cloning GitHub - lozuponelab/q2-SCNIC: A QIIME2 plugin for running SCNIC to /tmp/pip-req-build-pg0n29av
Running command git clone --filter=blob:none -q GitHub - lozuponelab/q2-SCNIC: A QIIME2 plugin for running SCNIC /tmp/pip-req-build-pg0n29av
Resolved GitHub - lozuponelab/q2-SCNIC: A QIIME2 plugin for running SCNIC to commit f8566e777557eecbdbffdabef10a15fa1622bd18
Preparing metadata (setup.py) ... done
Then I run: qiime dev refresh-cache
The outcome was: QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment.
Finally, I run: qiime SCNIC sparcc-filter \
--i-table table-with-species.qza
--o-table-filtered table-with-species.filtered.qza
Saved FeatureTable[Frequency] to: table-with-species.filtered.qza
(qiime2-2021.11) [email protected]:~/Desktop/CheeseB$ qiime SCNIC calculate-correlations \
--i-table table-with-species.filtered.qza
--p-method sparcc
--o-correlation-table table-with-species.filtered_correls.qza
and I received:
Plugin error from SCNIC:
[Errno 2] No such file or directory: 'fastspar'
Debug info has been saved to /tmp/qiime2-q2cli-err-_e9imgpc.log
Is there a way to solve this issue?
Thanks,
Elena