here the log file:
Correlating with sparcc
Traceback (most recent call last):
File “/cluster/work/gdc/people/ggionchetta/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/q2cli/commands.py”, line 329, in call
results = action(**arguments)
File “”, line 2, in calculate_correlations
File “/cluster/work/gdc/people/ggionchetta/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 245, in bound_callable
output_types, provenance)
File “/cluster/work/gdc/people/ggionchetta/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 390, in callable_executor
output_views = self._callable(**view_args)
File “/cluster/work/gdc/people/ggionchetta/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/q2_SCNIC/_SCNIC_methods.py”, line 29, in calculate_correlations
correls = ca.fastspar_correlation(table, verbose=True, nprocs=n_procs)
File “/cluster/work/gdc/people/ggionchetta/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/SCNIC/correlation_analysis.py”, line 77, in fastspar_correlation
table.to_dataframe().to_dense().to_csv(path.join(temp, ‘otu_table.tsv’), sep=’\t’, index_label=’#OTU ID’)
File “/cluster/work/gdc/people/ggionchetta/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/pandas/core/generic.py”, line 5141, in getattr
return object.getattribute(self, name)
AttributeError: ‘DataFrame’ object has no attribute ‘to_dense’