I am back in using q2-itsxpress with qiime2.2020.11 and I got the flowing error
Plugin error from itsxpress:
Command '['bbmerge.sh', 'in=/tmp/qiime2-archive-lk8lgl1p/b57c11b9-3dfc-49c7-b759-288d1f83f153/data/Neg1_64_L001_R1_001.fastq.gz', 'in2=/tmp/qiime2-archive-lk8lgl1p/b57c11b9-3dfc-49c7-b759-288d1f83f153/data/Neg1_64_L001_R2_001.fastq.gz', 'out=/tmp/itsxpress__y8_4e0w/seq.fq.gz', 't=1', 'maxmismatches=40', 'maxratio=0.3']' returned non-zero exit status 1.
Debug info has been saved to /tmp/qiime2-q2cli-err-824o6ss6.log
I would appreciated any inputs to solve this issue!
You need to update bbtools from within your qiime2 conda environment. It uses a feature only found in more recent versions.
2 Likes
Still got error when installing bbtools on qiime env:
conda install -c agbiome bbtools
Collecting package metadata (current_repodata.json): done
UnsatisfiableError:
Update:
But still got the error message as the thread starter wrote.
Maybe must have spesific version of bbtools?
Yes, you need a newer version of bbtools. Uninstall the versions you installed with conda and pip then reinstall this version (note the new conda repository and the name bbmap not bbtools).
conda install -c bioconda bbmap
By the way, what version of Qiime2 are you using?
lgmiguel
September 9, 2021, 5:17pm
6
Hi Dr. Adams I tried your recommendation. I uninstalled the conda and pip versions and then the qiime2. I activated the conda environment and downloaded the itsxpress and the pip q2-itsxpress. and I used the command conda install -c bioconda bbmap however I keep getting an error.
bbtools is not showing up, could you help me? Thank you very much in advance
conda list/home/lgmiguel/miniconda3/envs/qiime2-2021.4-py38-linux-conda.yml:
Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_gnu conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
alsa-lib 1.2.3 h516909a_0 conda-forge
argon2-cffi 20.1.0 py38h497a2fe_2 conda-forge
async_generator 1.10 py_0 conda-forge
attrs 20.3.0 pyhd3deb0d_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
bbmap 38.18 0 bioconda
bibtexparser 1.1.0 py_0 conda-forge
binutils_impl_linux-64 2.35.1 h193b22a_2 conda-forge
binutils_linux-64 2.35 h67ddf6f_30 conda-forge
bioconductor-biobase 2.50.0 r40hd029910_1 bioconda
bioconductor-biocgenerics 0.36.0 r40hdfd78af_1 bioconda
bioconductor-biocparallel 1.24.1 r40h399db7b_0 bioconda
bioconductor-biostrings 2.58.0 r40hd029910_1 bioconda
bioconductor-dada2 1.18.0 r40h399db7b_1 bioconda
bioconductor-delayedarray 0.16.3 r40hd029910_0 bioconda
bioconductor-genomeinfodb 1.26.4 r40hdfd78af_0 bioconda
bioconductor-genomeinfodbdata 1.2.4 r40hdfd78af_2 bioconda
bioconductor-genomicalignments 1.26.0 r40hd029910_1 bioconda
bioconductor-genomicranges 1.42.0 r40hd029910_1 bioconda
bioconductor-iranges 2.24.1 r40hd029910_0 bioconda
bioconductor-matrixgenerics 1.2.1 r40hdfd78af_0 bioconda
bioconductor-rhtslib 1.22.0 r40hd029910_1 bioconda
bioconductor-rsamtools 2.6.0 r40h399db7b_1 bioconda
bioconductor-s4vectors 0.28.1 r40hd029910_0 bioconda
bioconductor-shortread 1.48.0 r40h399db7b_1 bioconda
bioconductor-summarizedexperiment 1.20.0 r40hdfd78af_1 bioconda
bioconductor-xvector 0.30.0 r40hd029910_1 bioconda
bioconductor-zlibbioc 1.36.0 r40hd029910_1 bioconda
biom-format 2.1.10 py38h0b5ebd8_0 conda-forge
biopython 1.78 py38h7b6447c_0
blas 1.1 openblas conda-forge
blast 2.11.0 pl526he19e7b1_0 bioconda
bleach 3.3.0 pyh44b312d_0 conda-forge
bokeh 2.3.1 py38h578d9bd_0 conda-forge
bowtie2 2.4.2 py38hc2f83ea_2 bioconda
brotlipy 0.7.0 py38h497a2fe_1001 conda-forge
bwidget 1.9.14 ha770c72_0 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.17.1 h7f98852_1 conda-forge
ca-certificates 2021.7.5 h06a4308_1
cachecontrol 0.12.6 py_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cairo 1.16.0 h6cf1ce9_1008 conda-forge
certifi 2021.5.30 py38h06a4308_0
cffi 1.14.5 py38ha65f79e_0 conda-forge
chardet 4.0.0 py38h578d9bd_1 conda-forge
click 7.1.2 pyh9f0ad1d_0 conda-forge
cryptography 3.4.7 py38ha5dfef3_0 conda-forge
curl 7.76.1 h979ede3_1 conda-forge
cutadapt 3.4 py38h4a8c8d9_1 bioconda
cycler 0.10.0 py_2 conda-forge
cython 0.29.23 py38h709712a_1 conda-forge
dbus 1.13.6 h48d8840_2 conda-forge
deblur 1.1.0 py_2 bioconda
decorator 4.4.2 py_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
dendropy 4.5.2 pyh3252c3a_0 bioconda
dnaio 0.5.0 py38h4a8c8d9_1 bioconda
emperor 1.0.3 py38h578d9bd_0 conda-forge
entrez-direct 13.9 pl5262he881be0_2 bioconda
entrypoints 0.3 pyhd8ed1ab_1003 conda-forge
expat 2.3.0 h9c3ff4c_0 conda-forge
fastcluster 1.1.26 py38hc5bc63f_2 conda-forge
fasttree 2.1.10 0 bioconda
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.13.1 hba837de_1005 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
freetype 2.10.4 h0708190_1 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
future 0.18.2 py38h578d9bd_3 conda-forge
gcc_impl_linux-64 9.3.0 h70c0ae5_19 conda-forge
gcc_linux-64 9.3.0 hf25ea35_30 conda-forge
gettext 0.19.8.1 h0b5b191_1005 conda-forge
gfortran_impl_linux-64 9.3.0 hc4a2995_19 conda-forge
gfortran_linux-64 9.3.0 hdc58fab_30 conda-forge
glib 2.68.1 h9c3ff4c_0 conda-forge
glib-tools 2.68.1 h9c3ff4c_0 conda-forge
gneiss 0.4.6 py_0 bioconda
graphite2 1.3.13 h58526e2_1001 conda-forge
gsl 2.6 he838d99_2 conda-forge
gst-plugins-base 1.18.4 hf529b03_2 conda-forge
gstreamer 1.18.4 h76c114f_2 conda-forge
gxx_impl_linux-64 9.3.0 hd87eabc_19 conda-forge
gxx_linux-64 9.3.0 h3fbe746_30 conda-forge
h5py 3.2.1 nompi_py38h9915d05_100 conda-forge
harfbuzz 2.8.0 h83ec7ef_1 conda-forge
hdf5 1.10.6 nompi_h6a2412b_1114 conda-forge
hdmedians 0.14.2 py38hb5d20a5_0 conda-forge
hmmer 3.1b2 3 bioconda
htslib 1.12 h9093b5e_1 bioconda
icu 68.1 h58526e2_0 conda-forge
idna 2.10 pyh9f0ad1d_0 conda-forge
ijson 3.1.3 pyhd3deb0d_0 conda-forge
importlib-metadata 3.10.1 py38h578d9bd_0 conda-forge
iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge
ipykernel 5.5.3 py38hd0cf306_0 conda-forge
ipython 7.22.0 py38hd0cf306_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.6.3 pyhd3deb0d_0 conda-forge
iqtree 2.1.2 h56fc30b_0 bioconda
isa-l 2.30.0 ha770c72_4 conda-forge
itsxpress 1.8.0 py_1 bioconda
jedi 0.18.0 py38h578d9bd_2 conda-forge
jinja2 2.11.3 pyh44b312d_0 conda-forge
joblib 1.0.1 pyhd8ed1ab_0 conda-forge
jpeg 9d h36c2ea0_0 conda-forge
jsonschema 3.2.0 pyhd8ed1ab_3 conda-forge
jupyter_client 6.1.12 pyhd8ed1ab_0 conda-forge
jupyter_core 4.7.1 py38h578d9bd_0 conda-forge
jupyterlab_pygments 0.1.2 pyh9f0ad1d_0 conda-forge
jupyterlab_widgets 1.0.0 pyhd8ed1ab_1 conda-forge
kernel-headers_linux-64 2.6.32 he073ed8_14 conda-forge
kiwisolver 1.3.1 py38h1fd1430_1 conda-forge
krb5 1.17.2 h926e7f8_0 conda-forge
lcms2 2.12 hddcbb42_0 conda-forge
ld_impl_linux-64 2.35.1 hea4e1c9_2 conda-forge
libblas 3.9.0 8_openblas conda-forge
libcblas 3.9.0 8_openblas conda-forge
libclang 11.1.0 default_ha53f305_1 conda-forge
libcurl 7.76.1 hc4aaa36_1 conda-forge
libdeflate 1.7 h7f98852_5 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.10 hcdb4288_3 conda-forge
libffi 3.3 h58526e2_2 conda-forge
libgcc 7.2.0 h69d50b8_2 conda-forge
libgcc-devel_linux-64 9.3.0 h7864c58_19 conda-forge
libgcc-ng 9.3.0 h2828fa1_19 conda-forge
libgfortran-ng 9.3.0 hff62375_19 conda-forge
libgfortran5 9.3.0 hff62375_19 conda-forge
libglib 2.68.1 h3e27bee_0 conda-forge
libgomp 9.3.0 h2828fa1_19 conda-forge
libiconv 1.16 h516909a_0 conda-forge
liblapack 3.9.0 8_openblas conda-forge
libllvm11 11.1.0 hf817b99_2 conda-forge
libnghttp2 1.43.0 h812cca2_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopenblas 0.3.12 pthreads_h4812303_1 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.37 h21135ba_2 conda-forge
libpq 13.1 hfd2b0eb_2 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libssh2 1.9.0 ha56f1ee_6 conda-forge
libstdcxx-devel_linux-64 9.3.0 hb016644_19 conda-forge
libstdcxx-ng 9.3.0 h6de172a_19 conda-forge
libtiff 4.2.0 hbd63e13_2 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libuv 1.41.0 h7f98852_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp-base 1.2.0 h7f98852_2 conda-forge
libxcb 1.13 h7f98852_1003 conda-forge
libxkbcommon 1.0.3 he3ba5ed_0 conda-forge
libxml2 2.9.10 h72842e0_4 conda-forge
libxslt 1.1.33 h15afd5d_2 conda-forge
lockfile 0.12.2 py_1 conda-forge
lxml 4.6.3 py38hf1fe3a4_0 conda-forge
lz4 3.1.3 py38hebdc3cf_0 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
mafft 7.475 h779adbc_1 bioconda
make 4.3 hd18ef5c_1 conda-forge
markupsafe 1.1.1 py38h497a2fe_3 conda-forge
matplotlib 3.4.1 py38h578d9bd_0 conda-forge
matplotlib-base 3.4.1 py38hcc49a3a_0 conda-forge
mistune 0.8.4 py38h497a2fe_1004 conda-forge
more-itertools 8.7.0 pyhd8ed1ab_1 conda-forge
msgpack-python 1.0.2 py38h1fd1430_1 conda-forge
mysql-common 8.0.23 ha770c72_2 conda-forge
mysql-libs 8.0.23 h935591d_2 conda-forge
natsort 7.1.1 pyhd8ed1ab_0 conda-forge
nbclient 0.5.3 pyhd8ed1ab_0 conda-forge
nbconvert 6.0.7 py38h578d9bd_3 conda-forge
nbformat 5.1.3 pyhd8ed1ab_0 conda-forge
ncurses 6.2 h58526e2_4 conda-forge
nest-asyncio 1.5.1 pyhd8ed1ab_0 conda-forge
networkx 2.5.1 pyhd8ed1ab_0 conda-forge
nodejs 15.14.0 h92b4a50_0 conda-forge
nose 1.3.7 py_1006 conda-forge
notebook 6.3.0 pyha770c72_1 conda-forge
nspr 4.30 h9c3ff4c_0 conda-forge
nss 3.64 hb5efdd6_0 conda-forge
numpy 1.20.2 py38h9894fe3_0 conda-forge
olefile 0.46 pyh9f0ad1d_1 conda-forge
openblas 0.3.12 pthreads_h04b7a96_1 conda-forge
openjdk 11.0.1 h516909a_1016 conda-forge
openjpeg 2.4.0 hb52868f_1 conda-forge
openssl 1.1.1l h7f8727e_0
packaging 20.9 pyh44b312d_0 conda-forge
pandas 1.2.4 py38h1abd341_0 conda-forge
pandoc 2.12 h7f98852_0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
pango 1.48.4 hb8ff022_1 conda-forge
parso 0.8.2 pyhd8ed1ab_0 conda-forge
patsy 0.5.1 py_0 conda-forge
pcre 8.44 he1b5a44_0 conda-forge
pcre2 10.36 h032f7d1_1 conda-forge
perl 5.26.2 h36c2ea0_1008 conda-forge
perl-app-cpanminus 1.7044 pl526_1 bioconda
perl-archive-tar 2.32 pl526_0 bioconda
perl-base 2.23 pl526_1 bioconda
perl-business-isbn 3.004 pl526_0 bioconda
perl-business-isbn-data 20140910.003 pl526_0 bioconda
perl-carp 1.38 pl526_3 bioconda
perl-common-sense 3.74 pl526_2 bioconda
perl-compress-raw-bzip2 2.087 pl526he1b5a44_0 bioconda
perl-compress-raw-zlib 2.087 pl526hc9558a2_0 bioconda
perl-constant 1.33 pl526_1 bioconda
perl-data-dumper 2.173 pl526_0 bioconda
perl-digest-hmac 1.03 pl526_3 bioconda
perl-digest-md5 2.55 pl526_0 bioconda
perl-encode 2.88 pl526_1 bioconda
perl-encode-locale 1.05 pl526_6 bioconda
perl-exporter 5.72 pl526_1 bioconda
perl-exporter-tiny 1.002001 pl526_0 bioconda
perl-extutils-makemaker 7.36 pl526_1 bioconda
perl-file-listing 6.04 pl526_1 bioconda
perl-file-path 2.16 pl526_0 bioconda
perl-file-temp 0.2304 pl526_2 bioconda
perl-html-parser 3.72 pl526h6bb024c_5 bioconda
perl-html-tagset 3.20 pl526_3 bioconda
perl-html-tree 5.07 pl526_1 bioconda
perl-http-cookies 6.04 pl526_0 bioconda
perl-http-daemon 6.01 pl526_1 bioconda
perl-http-date 6.02 pl526_3 bioconda
perl-http-message 6.18 pl526_0 bioconda
perl-http-negotiate 6.01 pl526_3 bioconda
perl-io-compress 2.087 pl526he1b5a44_0 bioconda
perl-io-html 1.001 pl526_2 bioconda
perl-io-socket-ssl 2.066 pl526_0 bioconda
perl-io-zlib 1.10 pl526_2 bioconda
perl-json 4.02 pl526_0 bioconda
perl-json-xs 2.34 pl526h6bb024c_3 bioconda
perl-libwww-perl 6.39 pl526_0 bioconda
perl-list-moreutils 0.428 pl526_1 bioconda
perl-list-moreutils-xs 0.428 pl526_0 bioconda
perl-lwp-mediatypes 6.04 pl526_0 bioconda
perl-lwp-protocol-https 6.07 pl526_4 bioconda
perl-mime-base64 3.15 pl526_1 bioconda
perl-mozilla-ca 20180117 pl526_1 bioconda
perl-net-http 6.19 pl526_0 bioconda
perl-net-ssleay 1.88 pl526h90d6eec_0 bioconda
perl-ntlm 1.09 pl526_4 bioconda
perl-parent 0.236 pl526_1 bioconda
perl-pathtools 3.75 pl526h14c3975_1 bioconda
perl-scalar-list-utils 1.52 pl526h516909a_0 bioconda
perl-socket 2.027 pl526_1 bioconda
perl-storable 3.15 pl526h14c3975_0 bioconda
perl-test-requiresinternet 0.05 pl526_0 bioconda
perl-time-local 1.28 pl526_1 bioconda
perl-try-tiny 0.30 pl526_1 bioconda
perl-types-serialiser 1.0 pl526_2 bioconda
perl-uri 1.76 pl526_0 bioconda
perl-www-robotrules 6.02 pl526_3 bioconda
perl-xml-namespacesupport 1.12 pl526_0 bioconda
perl-xml-parser 2.44_01 pl5262hc3e0081_1002 conda-forge
perl-xml-sax 1.02 pl526_0 bioconda
perl-xml-sax-base 1.09 pl526_0 bioconda
perl-xml-sax-expat 0.51 pl526_3 bioconda
perl-xml-simple 2.25 pl526_1 bioconda
perl-xsloader 0.24 pl526_0 bioconda
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pigz 2.6 h27826a3_0 conda-forge
pillow 8.1.2 py38ha0e1e83_1 conda-forge
pip 21.0.1 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
pluggy 0.13.1 py38h578d9bd_4 conda-forge
prometheus_client 0.10.1 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.18 pyha770c72_0 conda-forge
psutil 5.8.0 py38h497a2fe_1 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
py 1.10.0 pyhd3deb0d_0 conda-forge
pycparser 2.20 pyh9f0ad1d_2 conda-forge
pygments 2.8.1 pyhd8ed1ab_0 conda-forge
pyopenssl 20.0.1 pyhd8ed1ab_0 conda-forge
pyparsing 2.4.7 pyh9f0ad1d_0 conda-forge
pyqt 5.12.3 py38h578d9bd_7 conda-forge
pyqt-impl 5.12.3 py38h7400c14_7 conda-forge
pyqt5-sip 4.19.18 py38h709712a_7 conda-forge
pyqtchart 5.12 py38h7400c14_7 conda-forge
pyqtwebengine 5.12.1 py38h7400c14_7 conda-forge
pyrsistent 0.17.3 py38h497a2fe_2 conda-forge
pysocks 1.7.1 py38h578d9bd_3 conda-forge
pytest 6.2.3 py38h578d9bd_0 conda-forge
python 3.8.8 hffdb5ce_0_cpython conda-forge
python-dateutil 2.8.1 py_0 conda-forge
python-isal 0.10.0 py38h497a2fe_0 conda-forge
python_abi 3.8 2_cp38 conda-forge
pytz 2021.1 pyhd8ed1ab_0 conda-forge
pyyaml 5.4.1 py38h497a2fe_0 conda-forge
pyzmq 22.0.3 py38h2035c66_1 conda-forge
q2-alignment 2021.4.0 py38_0 qiime2/label/r2021.4
q2-composition 2021.4.0 py38_0 qiime2/label/r2021.4
q2-cutadapt 2021.4.0 py38_0 qiime2/label/r2021.4
q2-dada2 2021.4.0 py38_0 qiime2/label/r2021.4
q2-deblur 2021.4.0 py38_0 qiime2/label/r2021.4
q2-demux 2021.4.0 py38_0 qiime2/label/r2021.4
q2-diversity 2021.4.0 py38_0 qiime2/label/r2021.4
q2-diversity-lib 2021.4.0 0 qiime2/label/r2021.4
q2-emperor 2021.4.0 py38_0 qiime2/label/r2021.4
q2-feature-classifier 2021.4.0 py38_0 qiime2/label/r2021.4
q2-feature-table 2021.4.0 py38_0 qiime2/label/r2021.4
q2-fragment-insertion 2021.4.0 py38_0 qiime2/label/r2021.4
q2-gneiss 2021.4.0 py38_0 qiime2/label/r2021.4
q2-itsxpress 1.8.0 pypi_0 pypi
q2-longitudinal 2021.4.0 py38_0 qiime2/label/r2021.4
q2-metadata 2021.4.0 py38_0 qiime2/label/r2021.4
q2-mystery-stew 2021.4.0 py38_0 qiime2/label/r2021.4
q2-phylogeny 2021.4.0 py38_0 qiime2/label/r2021.4
q2-quality-control 2021.4.0 py38_0 qiime2/label/r2021.4
q2-quality-filter 2021.4.0 py38_0 qiime2/label/r2021.4
q2-sample-classifier 2021.4.0 py38_0 qiime2/label/r2021.4
q2-taxa 2021.4.0 py38_0 qiime2/label/r2021.4
q2-types 2021.4.0 py38_0 qiime2/label/r2021.4
q2-vsearch 2021.4.0 py38_0 qiime2/label/r2021.4
q2cli 2021.4.0 py38_0 qiime2/label/r2021.4
q2galaxy 2021.4.0 py38_0 qiime2/label/r2021.4
q2templates 2021.4.0 py38_0 qiime2/label/r2021.4
qiime2 2021.4.0 py38_0 qiime2/label/r2021.4
qt 5.12.9 hda022c4_4 conda-forge
r-assertthat 0.2.1 r40hc72bb7e_2 conda-forge
r-backports 1.2.1 r40hcfec24a_0 conda-forge
r-base 4.0.3 h349a78a_8 conda-forge
r-bh 1.75.0_0 r40hc72bb7e_0 conda-forge
r-bitops 1.0_6 r40hcdcec82_1004 conda-forge
r-brio 1.1.1 r40hcfec24a_0 conda-forge
r-callr 3.6.0 r40hc72bb7e_0 conda-forge
r-cli 2.4.0 r40hc72bb7e_0 conda-forge
r-cluster 2.1.1 r40h859d828_0 conda-forge
r-colorspace 2.0_0 r40h9e2df91_0 conda-forge
r-crayon 1.4.1 r40hc72bb7e_0 conda-forge
r-desc 1.3.0 r40hc72bb7e_0 conda-forge
r-diffobj 0.3.3 r40hcfec24a_0 conda-forge
r-digest 0.6.27 r40h03ef668_0 conda-forge
r-ellipsis 0.3.1 r40hcdcec82_0 conda-forge
r-evaluate 0.14 r40hc72bb7e_2 conda-forge
r-fansi 0.4.2 r40hcfec24a_0 conda-forge
r-farver 2.1.0 r40h03ef668_0 conda-forge
r-formatr 1.9 r40hc72bb7e_0 conda-forge
r-futile.logger 1.4.3 r40hc72bb7e_1003 conda-forge
r-futile.options 1.0.1 r40hc72bb7e_1002 conda-forge
r-ggplot2 3.3.3 r40hc72bb7e_0 conda-forge
r-glue 1.4.2 r40hcfec24a_0 conda-forge
r-gtable 0.3.0 r40hc72bb7e_3 conda-forge
r-hwriter 1.3.2 r40hc72bb7e_1003 conda-forge
r-isoband 0.2.4 r40h03ef668_0 conda-forge
r-jpeg 0.1_8.1 r40hcfec24a_1 conda-forge
r-jsonlite 1.7.2 r40hcfec24a_0 conda-forge
r-labeling 0.4.2 r40hc72bb7e_0 conda-forge
r-lambda.r 1.2.4 r40hc72bb7e_1 conda-forge
r-lattice 0.20_41 r40hcfec24a_3 conda-forge
r-latticeextra 0.6_29 r40hc72bb7e_1 conda-forge
r-lifecycle 1.0.0 r40hc72bb7e_0 conda-forge
r-magrittr 2.0.1 r40hcfec24a_1 conda-forge
r-mass 7.3_53.1 r40hcfec24a_0 conda-forge
r-matrix 1.3_2 r40he454529_0 conda-forge
r-matrixstats 0.58.0 r40hcfec24a_0 conda-forge
r-mgcv 1.8_34 r40he454529_0 conda-forge
r-munsell 0.5.0 r40hc72bb7e_1003 conda-forge
r-nlme 3.1_152 r40h859d828_0 conda-forge
r-permute 0.9_5 r40h785f33e_3 conda-forge
r-pillar 1.6.0 r40hc72bb7e_0 conda-forge
r-pkgconfig 2.0.3 r40hc72bb7e_1 conda-forge
r-pkgload 1.2.1 r40h03ef668_0 conda-forge
r-plyr 1.8.6 r40h03ef668_1 conda-forge
r-png 0.1_7 r40hcfec24a_1004 conda-forge
r-praise 1.0.0 r40hc72bb7e_1004 conda-forge
r-processx 3.5.1 r40hcfec24a_0 conda-forge
r-ps 1.6.0 r40hcfec24a_0 conda-forge
r-r6 2.5.0 r40hc72bb7e_0 conda-forge
r-rcolorbrewer 1.1_2 r40h785f33e_1003 conda-forge
r-rcpp 1.0.6 r40h03ef668_0 conda-forge
r-rcppparallel 5.1.2 r40h03ef668_0 conda-forge
r-rcurl 1.98_1.3 r40hcfec24a_0 conda-forge
r-rematch2 2.1.2 r40hc72bb7e_1 conda-forge
r-reshape2 1.4.4 r40h03ef668_1 conda-forge
r-rlang 0.4.10 r40hcfec24a_0 conda-forge
r-rprojroot 2.0.2 r40hc72bb7e_0 conda-forge
r-rstudioapi 0.13 r40hc72bb7e_0 conda-forge
r-scales 1.1.1 r40hc72bb7e_0 conda-forge
r-snow 0.4_3 r40hc72bb7e_1002 conda-forge
r-stringi 1.5.3 r40hcabe038_1 conda-forge
r-stringr 1.4.0 r40hc72bb7e_2 conda-forge
r-testthat 3.0.2 r40h03ef668_0 conda-forge
r-tibble 3.1.1 r40hcfec24a_0 conda-forge
r-utf8 1.2.1 r40hcfec24a_0 conda-forge
r-vctrs 0.3.7 r40hcfec24a_0 conda-forge
r-vegan 2.5_7 r40h52d45c5_0 conda-forge
r-viridislite 0.4.0 r40hc72bb7e_0 conda-forge
r-waldo 0.2.5 r40hc72bb7e_0 conda-forge
r-withr 2.4.2 r40hc72bb7e_0 conda-forge
r-zeallot 0.1.0 r40hc72bb7e_1002 conda-forge
raxml 8.2.12 h779adbc_3 bioconda
readline 8.1 h46c0cb4_0 conda-forge
requests 2.25.1 pyhd3deb0d_0 conda-forge
samtools 1.12 h9aed4be_1 bioconda
scikit-bio 0.5.6 py38h0b5ebd8_4 conda-forge
scikit-learn 0.24.1 py38h658cfdd_0 conda-forge
scipy 1.6.2 py38h7b17777_0 conda-forge
seaborn 0.11.1 hd8ed1ab_1 conda-forge
seaborn-base 0.11.1 pyhd8ed1ab_1 conda-forge
sed 4.8 he412f7d_0 conda-forge
send2trash 1.5.0 py_0 conda-forge
sepp 4.3.10 py38h3252c3a_2 bioconda
setuptools 49.6.0 py38h578d9bd_3 conda-forge
six 1.15.0 pyh9f0ad1d_0 conda-forge
sortmerna 2.0 he860b03_4 bioconda
sqlite 3.35.4 h74cdb3f_0 conda-forge
statsmodels 0.12.2 py38h5c078b8_0 conda-forge
sysroot_linux-64 2.12 he073ed8_14 conda-forge
tbb 2020.2 h4bd325d_4 conda-forge
terminado 0.9.4 py38h578d9bd_0 conda-forge
testpath 0.4.4 py_0 conda-forge
threadpoolctl 2.1.0 pyh5ca1d4c_0 conda-forge
tk 8.6.10 h21135ba_1 conda-forge
tktable 2.10 hb7b940f_3 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tornado 6.1 py38h497a2fe_1 conda-forge
traitlets 5.0.5 py_0 conda-forge
typing_extensions 3.7.4.3 py_0 conda-forge
tzlocal 2.1 pyh9f0ad1d_0 conda-forge
unifrac 0.20.2 py38hc37a69a_1 bioconda
urllib3 1.26.4 pyhd8ed1ab_0 conda-forge
vsearch 2.7.0 1 bioconda
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.36.2 pyhd3deb0d_0 conda-forge
widgetsnbextension 3.5.1 py38h578d9bd_4 conda-forge
xopen 1.1.0 py38h578d9bd_3 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.0 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-libxt 1.2.1 h7f98852_2 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.5 h516909a_1 conda-forge
yaml 0.2.5 h516909a_0 conda-forge
zeromq 4.3.4 h9c3ff4c_0 conda-forge
zipp 3.4.1 pyhd8ed1ab_0 conda-forge
zlib 1.2.11 h516909a_1010 conda-forge
zstd 1.4.9 ha95c52a_0 conda-forge
Adam_Rivers
September 10, 2021, 11:46pm
7
If you have uninstalled it you can try asking for the newest version, sometimes conda will use a cached version otherwise.
`Conda install -c bioconda bbmap=38.92`
lgmiguel
September 11, 2021, 9:43pm
8
Thank you so much Dr. Adams
lizgehret
November 15, 2021, 3:51pm
9
An off-topic reply has been split into a new topic: q2-itsxpress: UnsatisfiableError
Please keep replies on-topic in the future.