q2-itsxpress bbmerge error

I am back in using q2-itsxpress with qiime2.2020.11 and I got the flowing error
~$ qiime itsxpress trim-pair-output-unmerged --i-per-sample-sequences demux_sp001.qza --p-region ITS1 --p-taxa F --p-cluster-id 1.0 --o-trimmed demux_sp001_trimmed.qza

Plugin error from itsxpress:

Command '['bbmerge.sh', 'in=/tmp/qiime2-archive-lk8lgl1p/b57c11b9-3dfc-49c7-b759-288d1f83f153/data/Neg1_64_L001_R1_001.fastq.gz', 'in2=/tmp/qiime2-archive-lk8lgl1p/b57c11b9-3dfc-49c7-b759-288d1f83f153/data/Neg1_64_L001_R2_001.fastq.gz', 'out=/tmp/itsxpress__y8_4e0w/seq.fq.gz', 't=1', 'maxmismatches=40', 'maxratio=0.3']' returned non-zero exit status 1.

Debug info has been saved to /tmp/qiime2-q2cli-err-824o6ss6.log

I would appreciated any inputs to solve this issue!

You need to update bbtools from within your qiime2 conda environment. It uses a feature only found in more recent versions.

2 Likes

Still got error when installing bbtools on qiime env:

conda install -c agbiome bbtools

Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed

UnsatisfiableError:

Update:
installed bbtools via pip… done

But still got the error message as the thread starter wrote.

Maybe must have spesific version of bbtools?

Yes, you need a newer version of bbtools. Uninstall the versions you installed with conda and pip then reinstall this version (note the new conda repository and the name bbmap not bbtools).

conda install -c bioconda bbmap

By the way, what version of Qiime2 are you using?

Hi Dr. Adams I tried your recommendation. I uninstalled the conda and pip versions and then the qiime2. I activated the conda environment and downloaded the itsxpress and the pip q2-itsxpress. and I used the command conda install -c bioconda bbmap however I keep getting an error.

bbtools is not showing up, could you help me? Thank you very much in advance

conda list
packages in environment at /home/lgmiguel/miniconda3/envs/qiime2-2021.4-py38-linux-conda.yml:

Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       1_gnu    conda-forge
_r-mutex                  1.0.1               anacondar_1    conda-forge
alsa-lib                  1.2.3                h516909a_0    conda-forge
argon2-cffi               20.1.0           py38h497a2fe_2    conda-forge
async_generator           1.10                       py_0    conda-forge
attrs                     20.3.0             pyhd3deb0d_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
bbmap                     38.18                         0    bioconda
bibtexparser              1.1.0                      py_0    conda-forge
binutils_impl_linux-64    2.35.1               h193b22a_2    conda-forge
binutils_linux-64         2.35                h67ddf6f_30    conda-forge
bioconductor-biobase      2.50.0            r40hd029910_1    bioconda
bioconductor-biocgenerics 0.36.0            r40hdfd78af_1    bioconda
bioconductor-biocparallel 1.24.1            r40h399db7b_0    bioconda
bioconductor-biostrings   2.58.0            r40hd029910_1    bioconda
bioconductor-dada2        1.18.0            r40h399db7b_1    bioconda
bioconductor-delayedarray 0.16.3            r40hd029910_0    bioconda
bioconductor-genomeinfodb 1.26.4            r40hdfd78af_0    bioconda
bioconductor-genomeinfodbdata 1.2.4             r40hdfd78af_2    bioconda
bioconductor-genomicalignments 1.26.0            r40hd029910_1    bioconda
bioconductor-genomicranges 1.42.0            r40hd029910_1    bioconda
bioconductor-iranges      2.24.1            r40hd029910_0    bioconda
bioconductor-matrixgenerics 1.2.1             r40hdfd78af_0    bioconda
bioconductor-rhtslib      1.22.0            r40hd029910_1    bioconda
bioconductor-rsamtools    2.6.0             r40h399db7b_1    bioconda
bioconductor-s4vectors    0.28.1            r40hd029910_0    bioconda
bioconductor-shortread    1.48.0            r40h399db7b_1    bioconda
bioconductor-summarizedexperiment 1.20.0            r40hdfd78af_1    bioconda
bioconductor-xvector      0.30.0            r40hd029910_1    bioconda
bioconductor-zlibbioc     1.36.0            r40hd029910_1    bioconda
biom-format               2.1.10           py38h0b5ebd8_0    conda-forge
biopython                 1.78             py38h7b6447c_0
blas                      1.1                    openblas    conda-forge
blast                     2.11.0          pl526he19e7b1_0    bioconda
bleach                    3.3.0              pyh44b312d_0    conda-forge
bokeh                     2.3.1            py38h578d9bd_0    conda-forge
bowtie2                   2.4.2            py38hc2f83ea_2    bioconda
brotlipy                  0.7.0           py38h497a2fe_1001    conda-forge
bwidget                   1.9.14               ha770c72_0    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.17.1               h7f98852_1    conda-forge
ca-certificates           2021.7.5             h06a4308_1
cachecontrol              0.12.6                     py_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cairo                     1.16.0            h6cf1ce9_1008    conda-forge
certifi                   2021.5.30        py38h06a4308_0
cffi                      1.14.5           py38ha65f79e_0    conda-forge
chardet                   4.0.0            py38h578d9bd_1    conda-forge
click                     7.1.2              pyh9f0ad1d_0    conda-forge
cryptography              3.4.7            py38ha5dfef3_0    conda-forge
curl                      7.76.1               h979ede3_1    conda-forge
cutadapt                  3.4              py38h4a8c8d9_1    bioconda
cycler                    0.10.0                     py_2    conda-forge
cython                    0.29.23          py38h709712a_1    conda-forge
dbus                      1.13.6               h48d8840_2    conda-forge
deblur                    1.1.0                      py_2    bioconda
decorator                 4.4.2                      py_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
dendropy                  4.5.2              pyh3252c3a_0    bioconda
dnaio                     0.5.0            py38h4a8c8d9_1    bioconda
emperor                   1.0.3            py38h578d9bd_0    conda-forge
entrez-direct             13.9            pl5262he881be0_2    bioconda
entrypoints               0.3             pyhd8ed1ab_1003    conda-forge
expat                     2.3.0                h9c3ff4c_0    conda-forge
fastcluster               1.1.26           py38hc5bc63f_2    conda-forge
fasttree                  2.1.10                        0    bioconda
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.13.1            hba837de_1005    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
freetype                  2.10.4               h0708190_1    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
future                    0.18.2           py38h578d9bd_3    conda-forge
gcc_impl_linux-64         9.3.0               h70c0ae5_19    conda-forge
gcc_linux-64              9.3.0               hf25ea35_30    conda-forge
gettext                   0.19.8.1          h0b5b191_1005    conda-forge
gfortran_impl_linux-64    9.3.0               hc4a2995_19    conda-forge
gfortran_linux-64         9.3.0               hdc58fab_30    conda-forge
glib                      2.68.1               h9c3ff4c_0    conda-forge
glib-tools                2.68.1               h9c3ff4c_0    conda-forge
gneiss                    0.4.6                      py_0    bioconda
graphite2                 1.3.13            h58526e2_1001    conda-forge
gsl                       2.6                  he838d99_2    conda-forge
gst-plugins-base          1.18.4               hf529b03_2    conda-forge
gstreamer                 1.18.4               h76c114f_2    conda-forge
gxx_impl_linux-64         9.3.0               hd87eabc_19    conda-forge
gxx_linux-64              9.3.0               h3fbe746_30    conda-forge
h5py                      3.2.1           nompi_py38h9915d05_100    conda-forge
harfbuzz                  2.8.0                h83ec7ef_1    conda-forge
hdf5                      1.10.6          nompi_h6a2412b_1114    conda-forge
hdmedians                 0.14.2           py38hb5d20a5_0    conda-forge
hmmer                     3.1b2                         3    bioconda
htslib                    1.12                 h9093b5e_1    bioconda
icu                       68.1                 h58526e2_0    conda-forge
idna                      2.10               pyh9f0ad1d_0    conda-forge
ijson                     3.1.3              pyhd3deb0d_0    conda-forge
importlib-metadata        3.10.1           py38h578d9bd_0    conda-forge
iniconfig                 1.1.1              pyh9f0ad1d_0    conda-forge
ipykernel                 5.5.3            py38hd0cf306_0    conda-forge
ipython                   7.22.0           py38hd0cf306_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                7.6.3              pyhd3deb0d_0    conda-forge
iqtree                    2.1.2                h56fc30b_0    bioconda
isa-l                     2.30.0               ha770c72_4    conda-forge
itsxpress                 1.8.0                      py_1    bioconda
jedi                      0.18.0           py38h578d9bd_2    conda-forge
jinja2                    2.11.3             pyh44b312d_0    conda-forge
joblib                    1.0.1              pyhd8ed1ab_0    conda-forge
jpeg                      9d                   h36c2ea0_0    conda-forge
jsonschema                3.2.0              pyhd8ed1ab_3    conda-forge
jupyter_client            6.1.12             pyhd8ed1ab_0    conda-forge
jupyter_core              4.7.1            py38h578d9bd_0    conda-forge
jupyterlab_pygments       0.1.2              pyh9f0ad1d_0    conda-forge
jupyterlab_widgets        1.0.0              pyhd8ed1ab_1    conda-forge
kernel-headers_linux-64   2.6.32              he073ed8_14    conda-forge
kiwisolver                1.3.1            py38h1fd1430_1    conda-forge
krb5                      1.17.2               h926e7f8_0    conda-forge
lcms2                     2.12                 hddcbb42_0    conda-forge
ld_impl_linux-64          2.35.1               hea4e1c9_2    conda-forge
libblas                   3.9.0                8_openblas    conda-forge
libcblas                  3.9.0                8_openblas    conda-forge
libclang                  11.1.0          default_ha53f305_1    conda-forge
libcurl                   7.76.1               hc4aaa36_1    conda-forge
libdeflate                1.7                  h7f98852_5    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.10               hcdb4288_3    conda-forge
libffi                    3.3                  h58526e2_2    conda-forge
libgcc                    7.2.0                h69d50b8_2    conda-forge
libgcc-devel_linux-64     9.3.0               h7864c58_19    conda-forge
libgcc-ng                 9.3.0               h2828fa1_19    conda-forge
libgfortran-ng            9.3.0               hff62375_19    conda-forge
libgfortran5              9.3.0               hff62375_19    conda-forge
libglib                   2.68.1               h3e27bee_0    conda-forge
libgomp                   9.3.0               h2828fa1_19    conda-forge
libiconv                  1.16                 h516909a_0    conda-forge
liblapack                 3.9.0                8_openblas    conda-forge
libllvm11                 11.1.0               hf817b99_2    conda-forge
libnghttp2                1.43.0               h812cca2_0    conda-forge
libogg                    1.3.4                h7f98852_1    conda-forge
libopenblas               0.3.12          pthreads_h4812303_1    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpng                    1.6.37               h21135ba_2    conda-forge
libpq                     13.1                 hfd2b0eb_2    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libssh2                   1.9.0                ha56f1ee_6    conda-forge
libstdcxx-devel_linux-64  9.3.0               hb016644_19    conda-forge
libstdcxx-ng              9.3.0               h6de172a_19    conda-forge
libtiff                   4.2.0                hbd63e13_2    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libuv                     1.41.0               h7f98852_0    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libwebp-base              1.2.0                h7f98852_2    conda-forge
libxcb                    1.13              h7f98852_1003    conda-forge
libxkbcommon              1.0.3                he3ba5ed_0    conda-forge
libxml2                   2.9.10               h72842e0_4    conda-forge
libxslt                   1.1.33               h15afd5d_2    conda-forge
lockfile                  0.12.2                     py_1    conda-forge
lxml                      4.6.3            py38hf1fe3a4_0    conda-forge
lz4                       3.1.3            py38hebdc3cf_0    conda-forge
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
mafft                     7.475                h779adbc_1    bioconda
make                      4.3                  hd18ef5c_1    conda-forge
markupsafe                1.1.1            py38h497a2fe_3    conda-forge
matplotlib                3.4.1            py38h578d9bd_0    conda-forge
matplotlib-base           3.4.1            py38hcc49a3a_0    conda-forge
mistune                   0.8.4           py38h497a2fe_1004    conda-forge
more-itertools            8.7.0              pyhd8ed1ab_1    conda-forge
msgpack-python            1.0.2            py38h1fd1430_1    conda-forge
mysql-common              8.0.23               ha770c72_2    conda-forge
mysql-libs                8.0.23               h935591d_2    conda-forge
natsort                   7.1.1              pyhd8ed1ab_0    conda-forge
nbclient                  0.5.3              pyhd8ed1ab_0    conda-forge
nbconvert                 6.0.7            py38h578d9bd_3    conda-forge
nbformat                  5.1.3              pyhd8ed1ab_0    conda-forge
ncurses                   6.2                  h58526e2_4    conda-forge
nest-asyncio              1.5.1              pyhd8ed1ab_0    conda-forge
networkx                  2.5.1              pyhd8ed1ab_0    conda-forge
nodejs                    15.14.0              h92b4a50_0    conda-forge
nose                      1.3.7                   py_1006    conda-forge
notebook                  6.3.0              pyha770c72_1    conda-forge
nspr                      4.30                 h9c3ff4c_0    conda-forge
nss                       3.64                 hb5efdd6_0    conda-forge
numpy                     1.20.2           py38h9894fe3_0    conda-forge
olefile                   0.46               pyh9f0ad1d_1    conda-forge
openblas                  0.3.12          pthreads_h04b7a96_1    conda-forge
openjdk                   11.0.1            h516909a_1016    conda-forge
openjpeg                  2.4.0                hb52868f_1    conda-forge
openssl                   1.1.1l               h7f8727e_0
packaging                 20.9               pyh44b312d_0    conda-forge
pandas                    1.2.4            py38h1abd341_0    conda-forge
pandoc                    2.12                 h7f98852_0    conda-forge
pandocfilters             1.4.2                      py_1    conda-forge
pango                     1.48.4               hb8ff022_1    conda-forge
parso                     0.8.2              pyhd8ed1ab_0    conda-forge
patsy                     0.5.1                      py_0    conda-forge
pcre                      8.44                 he1b5a44_0    conda-forge
pcre2                     10.36                h032f7d1_1    conda-forge
perl                      5.26.2            h36c2ea0_1008    conda-forge
perl-app-cpanminus        1.7044                  pl526_1    bioconda
perl-archive-tar          2.32                    pl526_0    bioconda
perl-base                 2.23                    pl526_1    bioconda
perl-business-isbn        3.004                   pl526_0    bioconda
perl-business-isbn-data   20140910.003            pl526_0    bioconda
perl-carp                 1.38                    pl526_3    bioconda
perl-common-sense         3.74                    pl526_2    bioconda
perl-compress-raw-bzip2   2.087           pl526he1b5a44_0    bioconda
perl-compress-raw-zlib    2.087           pl526hc9558a2_0    bioconda
perl-constant             1.33                    pl526_1    bioconda
perl-data-dumper          2.173                   pl526_0    bioconda
perl-digest-hmac          1.03                    pl526_3    bioconda
perl-digest-md5           2.55                    pl526_0    bioconda
perl-encode               2.88                    pl526_1    bioconda
perl-encode-locale        1.05                    pl526_6    bioconda
perl-exporter             5.72                    pl526_1    bioconda
perl-exporter-tiny        1.002001                pl526_0    bioconda
perl-extutils-makemaker   7.36                    pl526_1    bioconda
perl-file-listing         6.04                    pl526_1    bioconda
perl-file-path            2.16                    pl526_0    bioconda
perl-file-temp            0.2304                  pl526_2    bioconda
perl-html-parser          3.72            pl526h6bb024c_5    bioconda
perl-html-tagset          3.20                    pl526_3    bioconda
perl-html-tree            5.07                    pl526_1    bioconda
perl-http-cookies         6.04                    pl526_0    bioconda
perl-http-daemon          6.01                    pl526_1    bioconda
perl-http-date            6.02                    pl526_3    bioconda
perl-http-message         6.18                    pl526_0    bioconda
perl-http-negotiate       6.01                    pl526_3    bioconda
perl-io-compress          2.087           pl526he1b5a44_0    bioconda
perl-io-html              1.001                   pl526_2    bioconda
perl-io-socket-ssl        2.066                   pl526_0    bioconda
perl-io-zlib              1.10                    pl526_2    bioconda
perl-json                 4.02                    pl526_0    bioconda
perl-json-xs              2.34            pl526h6bb024c_3    bioconda
perl-libwww-perl          6.39                    pl526_0    bioconda
perl-list-moreutils       0.428                   pl526_1    bioconda
perl-list-moreutils-xs    0.428                   pl526_0    bioconda
perl-lwp-mediatypes       6.04                    pl526_0    bioconda
perl-lwp-protocol-https   6.07                    pl526_4    bioconda
perl-mime-base64          3.15                    pl526_1    bioconda
perl-mozilla-ca           20180117                pl526_1    bioconda
perl-net-http             6.19                    pl526_0    bioconda
perl-net-ssleay           1.88            pl526h90d6eec_0    bioconda
perl-ntlm                 1.09                    pl526_4    bioconda
perl-parent               0.236                   pl526_1    bioconda
perl-pathtools            3.75            pl526h14c3975_1    bioconda
perl-scalar-list-utils    1.52            pl526h516909a_0    bioconda
perl-socket               2.027                   pl526_1    bioconda
perl-storable             3.15            pl526h14c3975_0    bioconda
perl-test-requiresinternet 0.05                    pl526_0    bioconda
perl-time-local           1.28                    pl526_1    bioconda
perl-try-tiny             0.30                    pl526_1    bioconda
perl-types-serialiser     1.0                     pl526_2    bioconda
perl-uri                  1.76                    pl526_0    bioconda
perl-www-robotrules       6.02                    pl526_3    bioconda
perl-xml-namespacesupport 1.12                    pl526_0    bioconda
perl-xml-parser           2.44_01         pl5262hc3e0081_1002    conda-forge
perl-xml-sax              1.02                    pl526_0    bioconda
perl-xml-sax-base         1.09                    pl526_0    bioconda
perl-xml-sax-expat        0.51                    pl526_3    bioconda
perl-xml-simple           2.25                    pl526_1    bioconda
perl-xsloader             0.24                    pl526_0    bioconda
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pigz                      2.6                  h27826a3_0    conda-forge
pillow                    8.1.2            py38ha0e1e83_1    conda-forge
pip                       21.0.1             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h36c2ea0_0    conda-forge
pluggy                    0.13.1           py38h578d9bd_4    conda-forge
prometheus_client         0.10.1             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.18             pyha770c72_0    conda-forge
psutil                    5.8.0            py38h497a2fe_1    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
py                        1.10.0             pyhd3deb0d_0    conda-forge
pycparser                 2.20               pyh9f0ad1d_2    conda-forge
pygments                  2.8.1              pyhd8ed1ab_0    conda-forge
pyopenssl                 20.0.1             pyhd8ed1ab_0    conda-forge
pyparsing                 2.4.7              pyh9f0ad1d_0    conda-forge
pyqt                      5.12.3           py38h578d9bd_7    conda-forge
pyqt-impl                 5.12.3           py38h7400c14_7    conda-forge
pyqt5-sip                 4.19.18          py38h709712a_7    conda-forge
pyqtchart                 5.12             py38h7400c14_7    conda-forge
pyqtwebengine             5.12.1           py38h7400c14_7    conda-forge
pyrsistent                0.17.3           py38h497a2fe_2    conda-forge
pysocks                   1.7.1            py38h578d9bd_3    conda-forge
pytest                    6.2.3            py38h578d9bd_0    conda-forge
python                    3.8.8           hffdb5ce_0_cpython    conda-forge
python-dateutil           2.8.1                      py_0    conda-forge
python-isal               0.10.0           py38h497a2fe_0    conda-forge
python_abi                3.8                      2_cp38    conda-forge
pytz                      2021.1             pyhd8ed1ab_0    conda-forge
pyyaml                    5.4.1            py38h497a2fe_0    conda-forge
pyzmq                     22.0.3           py38h2035c66_1    conda-forge
q2-alignment              2021.4.0                 py38_0    qiime2/label/r2021.4
q2-composition            2021.4.0                 py38_0    qiime2/label/r2021.4
q2-cutadapt               2021.4.0                 py38_0    qiime2/label/r2021.4
q2-dada2                  2021.4.0                 py38_0    qiime2/label/r2021.4
q2-deblur                 2021.4.0                 py38_0    qiime2/label/r2021.4
q2-demux                  2021.4.0                 py38_0    qiime2/label/r2021.4
q2-diversity              2021.4.0                 py38_0    qiime2/label/r2021.4
q2-diversity-lib          2021.4.0                      0    qiime2/label/r2021.4
q2-emperor                2021.4.0                 py38_0    qiime2/label/r2021.4
q2-feature-classifier     2021.4.0                 py38_0    qiime2/label/r2021.4
q2-feature-table          2021.4.0                 py38_0    qiime2/label/r2021.4
q2-fragment-insertion     2021.4.0                 py38_0    qiime2/label/r2021.4
q2-gneiss                 2021.4.0                 py38_0    qiime2/label/r2021.4
q2-itsxpress              1.8.0                    pypi_0    pypi
q2-longitudinal           2021.4.0                 py38_0    qiime2/label/r2021.4
q2-metadata               2021.4.0                 py38_0    qiime2/label/r2021.4
q2-mystery-stew           2021.4.0                 py38_0    qiime2/label/r2021.4
q2-phylogeny              2021.4.0                 py38_0    qiime2/label/r2021.4
q2-quality-control        2021.4.0                 py38_0    qiime2/label/r2021.4
q2-quality-filter         2021.4.0                 py38_0    qiime2/label/r2021.4
q2-sample-classifier      2021.4.0                 py38_0    qiime2/label/r2021.4
q2-taxa                   2021.4.0                 py38_0    qiime2/label/r2021.4
q2-types                  2021.4.0                 py38_0    qiime2/label/r2021.4
q2-vsearch                2021.4.0                 py38_0    qiime2/label/r2021.4
q2cli                     2021.4.0                 py38_0    qiime2/label/r2021.4
q2galaxy                  2021.4.0                 py38_0    qiime2/label/r2021.4
q2templates               2021.4.0                 py38_0    qiime2/label/r2021.4
qiime2                    2021.4.0                 py38_0    qiime2/label/r2021.4
qt                        5.12.9               hda022c4_4    conda-forge
r-assertthat              0.2.1             r40hc72bb7e_2    conda-forge
r-backports               1.2.1             r40hcfec24a_0    conda-forge
r-base                    4.0.3                h349a78a_8    conda-forge
r-bh                      1.75.0_0          r40hc72bb7e_0    conda-forge
r-bitops                  1.0_6           r40hcdcec82_1004    conda-forge
r-brio                    1.1.1             r40hcfec24a_0    conda-forge
r-callr                   3.6.0             r40hc72bb7e_0    conda-forge
r-cli                     2.4.0             r40hc72bb7e_0    conda-forge
r-cluster                 2.1.1             r40h859d828_0    conda-forge
r-colorspace              2.0_0             r40h9e2df91_0    conda-forge
r-crayon                  1.4.1             r40hc72bb7e_0    conda-forge
r-desc                    1.3.0             r40hc72bb7e_0    conda-forge
r-diffobj                 0.3.3             r40hcfec24a_0    conda-forge
r-digest                  0.6.27            r40h03ef668_0    conda-forge
r-ellipsis                0.3.1             r40hcdcec82_0    conda-forge
r-evaluate                0.14              r40hc72bb7e_2    conda-forge
r-fansi                   0.4.2             r40hcfec24a_0    conda-forge
r-farver                  2.1.0             r40h03ef668_0    conda-forge
r-formatr                 1.9               r40hc72bb7e_0    conda-forge
r-futile.logger           1.4.3           r40hc72bb7e_1003    conda-forge
r-futile.options          1.0.1           r40hc72bb7e_1002    conda-forge
r-ggplot2                 3.3.3             r40hc72bb7e_0    conda-forge
r-glue                    1.4.2             r40hcfec24a_0    conda-forge
r-gtable                  0.3.0             r40hc72bb7e_3    conda-forge
r-hwriter                 1.3.2           r40hc72bb7e_1003    conda-forge
r-isoband                 0.2.4             r40h03ef668_0    conda-forge
r-jpeg                    0.1_8.1           r40hcfec24a_1    conda-forge
r-jsonlite                1.7.2             r40hcfec24a_0    conda-forge
r-labeling                0.4.2             r40hc72bb7e_0    conda-forge
r-lambda.r                1.2.4             r40hc72bb7e_1    conda-forge
r-lattice                 0.20_41           r40hcfec24a_3    conda-forge
r-latticeextra            0.6_29            r40hc72bb7e_1    conda-forge
r-lifecycle               1.0.0             r40hc72bb7e_0    conda-forge
r-magrittr                2.0.1             r40hcfec24a_1    conda-forge
r-mass                    7.3_53.1          r40hcfec24a_0    conda-forge
r-matrix                  1.3_2             r40he454529_0    conda-forge
r-matrixstats             0.58.0            r40hcfec24a_0    conda-forge
r-mgcv                    1.8_34            r40he454529_0    conda-forge
r-munsell                 0.5.0           r40hc72bb7e_1003    conda-forge
r-nlme                    3.1_152           r40h859d828_0    conda-forge
r-permute                 0.9_5             r40h785f33e_3    conda-forge
r-pillar                  1.6.0             r40hc72bb7e_0    conda-forge
r-pkgconfig               2.0.3             r40hc72bb7e_1    conda-forge
r-pkgload                 1.2.1             r40h03ef668_0    conda-forge
r-plyr                    1.8.6             r40h03ef668_1    conda-forge
r-png                     0.1_7           r40hcfec24a_1004    conda-forge
r-praise                  1.0.0           r40hc72bb7e_1004    conda-forge
r-processx                3.5.1             r40hcfec24a_0    conda-forge
r-ps                      1.6.0             r40hcfec24a_0    conda-forge
r-r6                      2.5.0             r40hc72bb7e_0    conda-forge
r-rcolorbrewer            1.1_2           r40h785f33e_1003    conda-forge
r-rcpp                    1.0.6             r40h03ef668_0    conda-forge
r-rcppparallel            5.1.2             r40h03ef668_0    conda-forge
r-rcurl                   1.98_1.3          r40hcfec24a_0    conda-forge
r-rematch2                2.1.2             r40hc72bb7e_1    conda-forge
r-reshape2                1.4.4             r40h03ef668_1    conda-forge
r-rlang                   0.4.10            r40hcfec24a_0    conda-forge
r-rprojroot               2.0.2             r40hc72bb7e_0    conda-forge
r-rstudioapi              0.13              r40hc72bb7e_0    conda-forge
r-scales                  1.1.1             r40hc72bb7e_0    conda-forge
r-snow                    0.4_3           r40hc72bb7e_1002    conda-forge
r-stringi                 1.5.3             r40hcabe038_1    conda-forge
r-stringr                 1.4.0             r40hc72bb7e_2    conda-forge
r-testthat                3.0.2             r40h03ef668_0    conda-forge
r-tibble                  3.1.1             r40hcfec24a_0    conda-forge
r-utf8                    1.2.1             r40hcfec24a_0    conda-forge
r-vctrs                   0.3.7             r40hcfec24a_0    conda-forge
r-vegan                   2.5_7             r40h52d45c5_0    conda-forge
r-viridislite             0.4.0             r40hc72bb7e_0    conda-forge
r-waldo                   0.2.5             r40hc72bb7e_0    conda-forge
r-withr                   2.4.2             r40hc72bb7e_0    conda-forge
r-zeallot                 0.1.0           r40hc72bb7e_1002    conda-forge
raxml                     8.2.12               h779adbc_3    bioconda
readline                  8.1                  h46c0cb4_0    conda-forge
requests                  2.25.1             pyhd3deb0d_0    conda-forge
samtools                  1.12                 h9aed4be_1    bioconda
scikit-bio                0.5.6            py38h0b5ebd8_4    conda-forge
scikit-learn              0.24.1           py38h658cfdd_0    conda-forge
scipy                     1.6.2            py38h7b17777_0    conda-forge
seaborn                   0.11.1               hd8ed1ab_1    conda-forge
seaborn-base              0.11.1             pyhd8ed1ab_1    conda-forge
sed                       4.8                  he412f7d_0    conda-forge
send2trash                1.5.0                      py_0    conda-forge
sepp                      4.3.10           py38h3252c3a_2    bioconda
setuptools                49.6.0           py38h578d9bd_3    conda-forge
six                       1.15.0             pyh9f0ad1d_0    conda-forge
sortmerna                 2.0                  he860b03_4    bioconda
sqlite                    3.35.4               h74cdb3f_0    conda-forge
statsmodels               0.12.2           py38h5c078b8_0    conda-forge
sysroot_linux-64          2.12                he073ed8_14    conda-forge
tbb                       2020.2               h4bd325d_4    conda-forge
terminado                 0.9.4            py38h578d9bd_0    conda-forge
testpath                  0.4.4                      py_0    conda-forge
threadpoolctl             2.1.0              pyh5ca1d4c_0    conda-forge
tk                        8.6.10               h21135ba_1    conda-forge
tktable                   2.10                 hb7b940f_3    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tornado                   6.1              py38h497a2fe_1    conda-forge
traitlets                 5.0.5                      py_0    conda-forge
typing_extensions         3.7.4.3                    py_0    conda-forge
tzlocal                   2.1                pyh9f0ad1d_0    conda-forge
unifrac                   0.20.2           py38hc37a69a_1    bioconda
urllib3                   1.26.4             pyhd8ed1ab_0    conda-forge
vsearch                   2.7.0                         1    bioconda
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
wheel                     0.36.2             pyhd3deb0d_0    conda-forge
widgetsnbextension        3.5.1            py38h578d9bd_4    conda-forge
xopen                     1.1.0            py38h578d9bd_3    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.7.0                h7f98852_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h7f98852_1    conda-forge
xorg-libxrender           0.9.10            h7f98852_1003    conda-forge
xorg-libxt                1.2.1                h7f98852_2    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.5                h516909a_1    conda-forge
yaml                      0.2.5                h516909a_0    conda-forge
zeromq                    4.3.4                h9c3ff4c_0    conda-forge
zipp                      3.4.1              pyhd8ed1ab_0    conda-forge
zlib                      1.2.11            h516909a_1010    conda-forge
zstd                      1.4.9                ha95c52a_0    conda-forge

If you have uninstalled it you can try asking for the newest version, sometimes conda will use a cached version otherwise.

`Conda install -c bioconda bbmap=38.92`

Thank you so much Dr. Adams