Hi
Is it possible to add an option to print/save the log of the software?
I just want to be sure that all the reads contained the primers that I want to remove.
This information was shown in the “original” cutadapt software.
Best
Greg
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Hello Greg,
Have you tried running cutadapt with the --verbose True
option? Does that produce the extra information you want or is there other info we can output?
Colin
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Running the cutadapt command with
--verbose | tee $PWD/CutadaptStdout.txt
will make a file called “CutadaptStdout.txt” which I think will log the information you’re looking for
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Thanks, exactly what I was looking for !
Greg
No worries, I only know because I wanted to log everything from my analysis into a log file!
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Ran across this today and saw we didn’t have a corresponding issue. I’ve created one, thanks for the discussion all.
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