Hi, Im trying to use a phylogentic tree generated using the ghost-tree plugin for core diversity analysis, but im geting the next message: Plugin error from diversity: ``tree`` must be rooted. Debug info has been saved to /tmp/qiime2-q2cli-err-24035sav.log Then i try to import the tree as unr…

Hi!! Sorry for the delayed answer. Here are the files and i'll aslo sen the files to your mail. Have a nice day and thank you for the help!! ghost-tree-foundation-allignment-90-otus.qza (296.8 KB) ghost-tree-midpoint-root.qza (239.3 KB) ghost-tree-unrooted.qza (234.7 KB) tree.nwk (441.7 KB)

Hi there! I'm sorry you're getting this error. I've run into similar problems with rooting not being recognized. Can you please attach the file or send it to jennietf@gmail.com ? Also, this week is a bit busy for me so I apologize if there are any delays, but I will get to this as fast as I can. Th…

This has been addressed with Emanuel, but I need to follow up here on the forum with a brief solution summary soon. Thanks for the reminder! @Mehrbod_Estaki & @thermokarst

QIIME 2 Forum

Problem using a ghost-tree for diversity analysis

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diversity, ghost-tree

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