Hi,
Im trying to use a phylogentic tree generated using the ghost-tree plugin for core diversity analysis, but im geting the next message:
Plugin error from diversity:
``tree`` must be rooted.
Debug info has been saved to /tmp/qiime2-q2cli-err-24035sav.log
Then i try to import the tree as unrooted and then root it using phylogeny midpoint-root, but i get the same messge.
When i check the debug info i get this:
Traceback (most recent call last):
File "/usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/q2cli/commands.py", line 327, in __call__
results = action(**arguments)
File "</usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/decorator.py:decorator-gen-394>", line 2, in core_metric$ File "/usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py", line 240, in bound_callable
output_types, provenance)
File "/usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py", line 477, in _callable_executor_
outputs = self._callable(scope.ctx, **view_args)
File "/usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/q2_diversity/_core_metrics.py", line 55, in core_metrics_$ metric='faith_pd')
File "</usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/decorator.py:decorator-gen-499>", line 2, in alpha_phylo$ File "/usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py", line 240, in bound_callable
output_types, provenance)
File "/usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py", line 383, in _callable_executor_
output_views = self._callable(**view_args)
File "/usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/q2_diversity/_alpha/_method.py", line 54, in alpha_phylog$ tree=phylogeny)
File "/usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/skbio/diversity/_driver.py", line 170, in alpha_diversity
counts, otu_ids, tree, validate, single_sample=False)
File "/usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/skbio/diversity/alpha/_faith_pd.py", line 136, in _setup_$ _validate_otu_ids_and_tree(counts[0], otu_ids, tree)
**File "/usr/local/bioconda/envs/qiime2-2019.7/lib/python3.6/site-packages/skbio/diversity/_util.py", line 79, in _validate_otu_ids_$ raise ValueError("``tree`` must be rooted.")**
**ValueError: ``tree`` must be rooted.**
if some one could help me wold be awesome