Hi @sleva88, welcome to :qiime2:!
I think the names of your files, e.g. C1_S43_L001_R1_001_trimmed.fastq
end up violating the naming schema for Casava. I think if you remove _trimmed
from the file names it should work.
Alternatively, you can leave the files named as they are and try the Manifest format.
-Mike