Hello, I am running the following command:
qiime cutadapt trim-single --i-demultiplexed-sequences demux.qza --p-front ^primersequence --p-adapter primersequence$ --p-times 2 --p-cores 4 --p-error-rate 0 --p-match-read-wildcards --p-match-adapter-wildcards --o-trimmed-sequences trimmed1.qza --verbose
The program runs eventually till the last sample, and then it gives me this error:
Traceback (most recent call last):
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2cli/commands.py”, line 311, in call
results = action(**arguments)
File “</data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/site-packages/decorator.py:decorator-gen-455>”, line 2, in trim_single
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 231, in bound_callable
output_types, provenance)
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 393, in callable_executor
spec.qiime_type, output_view, spec.view_type, prov)
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/site-packages/qiime2/sdk/result.py”, line 265, in _from_view
result = transformation(view)
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/site-packages/qiime2/core/transform.py”, line 70, in transformation
new_view = transformer(view)
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2_types/per_sample_sequences/_transformer.py”, line 73, in _3
dirfmt, SingleLanePerSampleSingleEndFastqDirFmt)
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2_types/per_sample_sequences/_transformer.py”, line 56, in _single_lane_per_sample_fastq_helper
read_number=read_number)
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/site-packages/qiime2/plugin/model/directory_format.py”, line 87, in write_data
result.path._move_or_copy(self.path_maker(**kwargs))
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/site-packages/qiime2/core/path.py”, line 35, in _move_or_copy
return shutil.copy(str(self), str(other))
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/shutil.py”, line 241, in copy
copyfile(src, dst, follow_symlinks=follow_symlinks)
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/shutil.py”, line 122, in copyfile
copyfileobj(fsrc, fdst)
File “/data/rbsat/Miniconda/envs/qiime2-2019.4/lib/python3.6/shutil.py”, line 82, in copyfileobj
fdst.write(buf)
OSError: [Errno 28] No space left on device
I am not sure what is the problem, the server I am using has enough space there is 300GB+ to use.
Can anyone help me regarding this issue?