Plotting an alpha rarefaction curve

General Discussion
1

Hello,

Can I know how to plot an alpha rarefaction curve that has observed OTUs instead of shannon diversity in the y-axis?

The code I used was as follows,
qiime diversity alpha-rarefaction
--i-table table.qza
--p-max-depth 4000
--o-visualization alpha-rarefaction.qzv

Thank you in advance,
Brigitta

2

Hello!
You can choose observed features in the drop down menu of the visualization you already obtained earlier.

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