I am trying to create a 16S taxonomy visualization from a .qza file and have encountered a plugin error that I have trouble understanding. Please help!
I am running qiime 2 - 11.2020 on a cluster.
Here are the commands and errors:
]$ qiime metadata tabulate --m-input-file 16S-taxonomy.qza --o-visualization 16S-taxonomy.qzv --verbose
/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/site-packages/ijson/backends/init.py:22: UserWarning: Cannot determine yajl version, assuming <1.0.12
warnings.warn(‘Cannot determine yajl version, assuming <1.0.12’)
Traceback (most recent call last):
File “/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/site-packages/q2cli/commands.py”, line 329, in call
results = action(**arguments)
File “”, line 2, in tabulate
File “/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 245, in bound_callable
output_types, provenance)
File “/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 452, in callable_executor
ret_val = self._callable(output_dir=temp_dir, **view_args)
File “/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/site-packages/q2_metadata/_tabulate.py”, line 36, in tabulate
context={‘table’: table, ‘page_size’: page_size})
File “/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/site-packages/q2templates/_templates.py”, line 41, in render
shutil.copy2(os.path.join(template_data, ‘base.html’), temp_dir.name)
File “/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/shutil.py”, line 264, in copy2
copystat(src, dst, follow_symlinks=follow_symlinks)
File “/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/shutil.py”, line 229, in copystat
_copyxattr(src, dst, follow_symlinks=follow)
File “/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/shutil.py”, line 164, in _copyxattr
value = os.getxattr(src, name, follow_symlinks=follow_symlinks)
OSError: [Errno 22] Invalid argument: ‘/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/site-packages/q2templates/templates/base.html’
Plugin error from metadata:
[Errno 22] Invalid argument: ‘/share/pkg/condas/2018-05-11/envs/qiime2-2020.11/lib/python3.6/site-packages/q2templates/templates/base.html’
See above for debug info.
Thank you for your time!