PCA biplot in R

Other Bioinformatics Tools
1

Hi, does anyone here know how to replicate the PCA biplot implemented in Qiime2 using R? I've been searching the internet for several days but I can't seem to find any good reference for doing this.

If anyone can link me to a helpful reference or teach me how to do it, I would be really grateful.

Thank you very much.

Best,
Sandy

2

Hello Sandy,

Phyloseq full tutorial for plot_ordination() :point_left:

We don't really answer phyloseq questions on the Qiime2 forums, but hopefully this helps you get started!

3

And a related non-phyloseq solution here as well.

4

Thank you so much :slight_smile:

5

Thank you so much. This is very helpful and I actually followed it :slight_smile: