Parameters surrounding training of feature-classifier (16S V4-V5).

[colinbrislawn (Colin J Brislawn)]

For Johann, or future folks who find this post, check out the full RESCRIPt tutorial!

There is lots of discussion about how and why this process works.

Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt

Please consider this tutorial a living document, which may change based upon community feedback and ongoing plugin development. RESCRIPt RESCRIPt (REference Sequence annotation and CuRatIon Pipeline) is a python package and QIIME 2 plugin for formatting, managing, and manipulating sequence reference databases. This package was designed for compiling, manipulating, and evaluating sequence reference databases from SILVA, NCBI, Greengenes, GTDB, and other sources, and for construc…