I am trying to filter my feauture table to only include my Reservoir names Blank and Dolwen. For some reason it works fine when only searching for Dolwen but when I combine the two I get an error. Here is my code:
This has just worked dont know why it didn’t like the same code for filtering rep-seqs but filtering using the filtered table did work so thank you so much!
I think it is because metadata file and table.qza are partially sharing the same data, as well as table.qza and rep-seqs.qza. But metadata and rep-seqs.qza do not
Because the filter you applied to the table was for the sample IDs, but those IDs will never be present in your rep seqs, because that is comprised of Feature IDs, which is why everything was filtered out. The approach you ultimately took is the right one, good work!