I was wondering how to estimate the p-value for statistical comparison between the phyla of two different subjects. Is there a way to do this in QIIME 2?
For example, I require something like this " The phyla abundance composition differed significantly between intestinal and faecal samples (PERMANOVA: P = 0.002, pseudo r2 = 0.09; Permutest: P = 0.093). Intestinal samples contained an enrichment of Proteobacteria compared with faecal samples (15.71-fold change, P < 0.001) and more Actinobacteria (2.09-fold change, P = 0.002). Faecal samples contained significantly more Lentisphaerae (1.74-fold change, P = 0.050)."
Thanks in advance.