Has anyone done an NRI/NTI analysis (16S) using QIIME2 and is this a possibility?
I saw qiime1 has a relatedness.py script and I know you can convert between the two versions, but I’m not sure how to efficiently group (I’m guessing you could make files yourself that list the taxa you’re interested in but I was hoping there was a faster way).
I didn’t see anything for qiime2 though. Also, if you were going to this, has anyone tried also doing it for fungal ITS data (using ghost tree plugin since the ITS tree is not very accurate I’ve read)?
Any thoughts on this would be appreciated, thanks!