Nanopore Long Read Demultiplexed Full 16S rRNA Seq

[BDubois]

Hello Malek,

If you are still looking for a solution, the PRONAME pipeline could help you process Nanopore metabarcoding data and integrate it into QIIME2:

PRONAME: Enhancing Taxonomic Accuracy with Nanopore Long-Read Metabarcoding and QIIME2

Hi everyone! Here is a post for those of you interested in combining the strengths of both QIIME2 and Nanopore long-read metabarcoding . As you may know, the sequencing technology developed by Oxford Nanopore Technologies (ONT) enables the generation of (very) long reads, which can significantly enhance the taxonomic resolution of metabarcoding approaches . For example, the entire 16S-ITS-23S operon region can be sequenced in one go. However, Nanopore sequencing has hi…

Hope this helps,
Ben