I am planning on doing the cutadapt, but there is a problem about it.
Please excuse me for covering the primer sequence. I wanted to adapt the DADA2 ITS cutadapt command with QIIME2.
PRIMERB is the reverse-complement of PRIMERC
PRIMERD is the reverse-complement of PRIMERA
qiime cutadapt trim-paired \
> --i-demultiplexed-sequences demux-paired-end-one.qza \
> --p-front-f PRIMERA \
> --p-adapter-f PRIMERB \
> --p-front-r PRIMERC \
> --p-adapter-r PRIMERD \
> --p-minimum-length 150 \
> --o-trimmed-sequences cut-demux-paired-end-one.qza \
> --verbose
Running external command line application. This may print messages to stdout and/or stderr.
The commands to be run are below. These commands cannot be manually re-run as they will depend on temporary files that no longer exist.
Command: cutadapt --cores 1 --error-rate 0.1 --times 1 --overlap 3 --minimum-length 150 -o /tmp/q2-CasavaOneEightSingleLanePerSampleDirFmt-s79fqx61/T01E08_S88_L001_R1_001.fastq.gz -p /tmp/q2-CasavaOneEightSingleLanePerSampleDirFmt-s79fqx61/T01E08_S88_L001_R2_001.fastq.gz --adapter PRIMERA --front PRIMERB -A PRIMERC -G PRIMERD /tmp/qiime2-archive-dzcy096c/09a6e8b4-db53-4de0-ae70-a9de1cc1d66a/data/T01E08_S88_L001_R1_001.fastq.gz /tmp/qiime2-archive-dzcy096c/09a6e8b4-db53-4de0-ae70-a9de1cc1d66a/data/T01E08_S88_L001_R2_001.fastq.gz
Traceback (most recent call last):
File "/home/dikip/.local/bin/cutadapt", line 5, in <module>
from cutadapt.__main__ import main_cli
ModuleNotFoundError: No module named 'cutadapt'
Traceback (most recent call last):
File "/home/dikip/miniconda3/envs/qiime2-2021.2/lib/python3.6/site-packages/q2cli/commands.py", line 329, in __call__
results = action(**arguments)
File "<decorator-gen-528>", line 2, in trim_paired
File "/home/dikip/miniconda3/envs/qiime2-2021.2/lib/python3.6/site-packages/qiime2/sdk/action.py", line 245, in bound_callable
output_types, provenance)
File "/home/dikip/miniconda3/envs/qiime2-2021.2/lib/python3.6/site-packages/qiime2/sdk/action.py", line 390, in _callable_executor_
output_views = self._callable(**view_args)
File "/home/dikip/miniconda3/envs/qiime2-2021.2/lib/python3.6/site-packages/q2_cutadapt/_trim.py", line 189, in trim_paired
run_commands(cmds)
File "/home/dikip/miniconda3/envs/qiime2-2021.2/lib/python3.6/site-packages/q2_cutadapt/_trim.py", line 30, in run_commands
subprocess.run(cmd, check=True)
File "/home/dikip/miniconda3/envs/qiime2-2021.2/lib/python3.6/subprocess.py", line 438, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['cutadapt', '--cores', '1', '--error-rate', '0.1', '--times', '1', '--overlap', '3', '--minimum-length', '150', '-o', '/tmp/q2-CasavaOneEightSingleLanePerSampleDirFmt-s79fqx61/T01E08_S88_L001_R1_001.fastq.gz', '-p', '/tmp/q2-CasavaOneEightSingleLanePerSampleDirFmt-s79fqx61/T01E08_S88_L001_R2_001.fastq.gz', '--adapter', 'PRIMERA', '--front', 'PRIMERB', '-A', 'PRIMERC', '-G', 'PRIMERD', '/tmp/qiime2-archive-dzcy096c/09a6e8b4-db53-4de0-ae70-a9de1cc1d66a/data/T01E08_S88_L001_R1_001.fastq.gz', '/tmp/qiime2-archive-dzcy096c/09a6e8b4-db53-4de0-ae70-a9de1cc1d66a/data/T01E08_S88_L001_R2_001.fastq.gz']' returned non-zero exit status 1.
Plugin error from cutadapt:
Command '['cutadapt', '--cores', '1', '--error-rate', '0.1', '--times', '1', '--overlap', '3', '--minimum-length', '150', '-o', '/tmp/q2-CasavaOneEightSingleLanePerSampleDirFmt-s79fqx61/T01E08_S88_L001_R1_001.fastq.gz', '-p', '/tmp/q2-CasavaOneEightSingleLanePerSampleDirFmt-s79fqx61/T01E08_S88_L001_R2_001.fastq.gz', '--adapter', 'PRIMERA', '--front', 'PRIMERB', '-A', 'PRIMERC', '-G', 'PRIMERD', '/tmp/qiime2-archive-dzcy096c/09a6e8b4-db53-4de0-ae70-a9de1cc1d66a/data/T01E08_S88_L001_R1_001.fastq.gz', '/tmp/qiime2-archive-dzcy096c/09a6e8b4-db53-4de0-ae70-a9de1cc1d66a/data/T01E08_S88_L001_R2_001.fastq.gz']' returned non-zero exit status 1.
See above for debug info.
I am working with WSL2. It was alright when I used qiime2-2020.11. Then when installing new release of qiime2-2021.2 the error above appear. I tried the old qiime2-2020.11 env again but same error appeared.
I also had tried to remove both conda environment with
conda remove --name qiime2-2020.11 --all and
conda remove --name qiime2-2021.2 --all
command and then installed the newest version again, similar no module named cutadapt error message appear.
Since this is similar with the following issue, please find the conda list output I ran when qiime2-2021.2 were activated as the following:
conda list
# packages in environment at /home/dikip/miniconda3/envs/qiime2-2021.2:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_llvm conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
alsa-lib 1.2.3 h516909a_0 conda-forge
arb-bio-tools 6.0.6 haa8b8d8_8 bioconda
argon2-cffi 20.1.0 py36h8f6f2f9_2 conda-forge
async_generator 1.10 py_0 conda-forge
attrs 20.3.0 pyhd3deb0d_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.1 py_0 conda-forge
bibtexparser 1.1.0 py_0 conda-forge
binutils_impl_linux-64 2.35.1 h193b22a_2 conda-forge
binutils_linux-64 2.35 h67ddf6f_30 conda-forge
bioconductor-biobase 2.50.0 r40h037d062_0 bioconda
bioconductor-biocgenerics 0.36.0 r40_0 bioconda
bioconductor-biocparallel 1.24.0 r40h5f743cb_0 bioconda
bioconductor-biostrings 2.58.0 r40h037d062_0 bioconda
bioconductor-dada2 1.18.0 r40h5f743cb_0 bioconda
bioconductor-delayedarray 0.16.0 r40h037d062_0 bioconda
bioconductor-genomeinfodb 1.26.0 r40_0 bioconda
bioconductor-genomeinfodbdata 1.2.4 r40_0 bioconda
bioconductor-genomicalignments 1.26.0 r40h037d062_0 bioconda
bioconductor-genomicranges 1.42.0 r40h037d062_0 bioconda
bioconductor-iranges 2.24.0 r40h037d062_0 bioconda
bioconductor-matrixgenerics 1.2.0 r40_0 bioconda
bioconductor-rhtslib 1.22.0 r40h037d062_0 bioconda
bioconductor-rsamtools 2.6.0 r40h5f743cb_0 bioconda
bioconductor-s4vectors 0.28.0 r40h037d062_0 bioconda
bioconductor-shortread 1.48.0 r40h5f743cb_0 bioconda
bioconductor-summarizedexperiment 1.20.0 r40_0 bioconda
bioconductor-xvector 0.30.0 r40h037d062_0 bioconda
bioconductor-zlibbioc 1.36.0 r40h037d062_0 bioconda
biom-format 2.1.10 py36ha112f06_0 conda-forge
blas 2.17 openblas conda-forge
blast 2.10.1 pl526he19e7b1_3 bioconda
bleach 3.3.0 pyh44b312d_0 conda-forge
bokeh 2.2.3 py36h5fab9bb_0 conda-forge
boost-cpp 1.70.0 h7b93d67_3 conda-forge
bowtie2 2.4.2 py36h5202f60_1 bioconda
brotlipy 0.7.0 py36h8f6f2f9_1001 conda-forge
bwidget 1.9.14 ha770c72_0 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.17.1 h36c2ea0_0 conda-forge
ca-certificates 2020.12.5 ha878542_0 conda-forge
cachecontrol 0.12.6 py_0 conda-forge
cached-property 1.5.1 py_0 conda-forge
cairo 1.16.0 h9f066cc_1006 conda-forge
certifi 2020.12.5 py36h5fab9bb_1 conda-forge
cffi 1.14.5 py36hc120d54_0 conda-forge
chardet 4.0.0 py36h5fab9bb_1 conda-forge
click 7.1.2 pyh9f0ad1d_0 conda-forge
cryptography 3.4.4 py36hc39840e_0 conda-forge
curl 7.71.1 he644dc0_8 conda-forge
cutadapt 3.2 py36h4c5857e_0 bioconda
cycler 0.10.0 py_2 conda-forge
cython 0.29.22 py36hc4f0c31_0 conda-forge
dataclasses 0.7 pyhe4b4509_6 conda-forge
deblur 1.1.0 py_2 bioconda
decorator 4.4.2 py_0 conda-forge
defusedxml 0.6.0 py_0 conda-forge
dendropy 4.5.2 pyh3252c3a_0 bioconda
dnaio 0.5.0 py36h4c5857e_0 bioconda
emperor 1.0.1 py36h5fab9bb_1 conda-forge
entrez-direct 13.9 pl526h375a9b1_1 bioconda
entrypoints 0.3 pyhd8ed1ab_1003 conda-forge
expat 2.2.10 h9c3ff4c_0 conda-forge
fastcluster 1.1.26 py36h7c3b610_2 conda-forge
fasttree 2.1.10 0 bioconda
fontconfig 2.13.1 hba837de_1004 conda-forge
freetype 2.10.4 h0708190_1 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
future 0.18.2 py36h5fab9bb_3 conda-forge
gcc_impl_linux-64 7.5.0 habd7529_18 conda-forge
gcc_linux-64 7.5.0 h47867f9_30 conda-forge
gettext 0.19.8.1 h0b5b191_1005 conda-forge
gfortran_impl_linux-64 7.5.0 h56cb351_18 conda-forge
gfortran_linux-64 7.5.0 h78c8a43_30 conda-forge
giflib 5.2.1 h36c2ea0_2 conda-forge
glib 2.66.7 h9c3ff4c_1 conda-forge
glib-tools 2.66.7 h9c3ff4c_1 conda-forge
gneiss 0.4.6 py_0 bioconda
graphite2 1.3.13 h58526e2_1001 conda-forge
gsl 2.6 he838d99_2 conda-forge
gxx_impl_linux-64 7.5.0 hd0bb8aa_18 conda-forge
gxx_linux-64 7.5.0 h555fc39_30 conda-forge
h5py 3.1.0 nompi_py36hc1bc4f5_100 conda-forge
harfbuzz 2.7.2 ha5b49bf_1 conda-forge
hdf5 1.10.6 nompi_h7c3c948_1111 conda-forge
hdmedians 0.14.1 py36h92226af_1 conda-forge
hmmer 3.1b2 3 bioconda
htslib 1.11 hd3b49d5_2 bioconda
icu 67.1 he1b5a44_0 conda-forge
idna 2.10 pyh9f0ad1d_0 conda-forge
ijson 3.1.3 pyhd3deb0d_0 conda-forge
importlib-metadata 3.4.0 py36h5fab9bb_0 conda-forge
importlib_metadata 3.4.0 hd8ed1ab_0 conda-forge
iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge
ipykernel 5.5.0 py36he448a4c_1 conda-forge
ipython 7.16.1 py36he448a4c_2 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.6.3 pyhd3deb0d_0 conda-forge
iqtree 2.0.3 h176a8bc_1 bioconda
isa-l 2.30.0 ha770c72_3 conda-forge
jedi 0.17.2 py36h5fab9bb_1 conda-forge
jinja2 2.11.3 pyh44b312d_0 conda-forge
joblib 1.0.1 pyhd8ed1ab_0 conda-forge
jpeg 9d h36c2ea0_0 conda-forge
jsonschema 3.2.0 py_2 conda-forge
jupyter_client 6.1.11 pyhd8ed1ab_1 conda-forge
jupyter_core 4.7.1 py36h5fab9bb_0 conda-forge
jupyterlab_pygments 0.1.2 pyh9f0ad1d_0 conda-forge
jupyterlab_widgets 1.0.0 pyhd8ed1ab_1 conda-forge
kernel-headers_linux-64 2.6.32 h77966d4_13 conda-forge
kiwisolver 1.3.1 py36h605e78d_1 conda-forge
krb5 1.17.2 h926e7f8_0 conda-forge
lcms2 2.12 hddcbb42_0 conda-forge
ld_impl_linux-64 2.35.1 hea4e1c9_2 conda-forge
libarbdb 6.0.6 haa8b8d8_8 bioconda
libblas 3.8.0 17_openblas conda-forge
libcblas 3.8.0 17_openblas conda-forge
libcurl 7.71.1 hcdd3856_8 conda-forge
libdeflate 1.7 h7f98852_5 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.3 h58526e2_2 conda-forge
libgcc 7.2.0 h69d50b8_2 conda-forge
libgcc-devel_linux-64 7.5.0 hda03d7c_18 conda-forge
libgcc-ng 9.3.0 h2828fa1_18 conda-forge
libgfortran-ng 7.5.0 h14aa051_18 conda-forge
libgfortran4 7.5.0 h14aa051_18 conda-forge
libglib 2.66.7 h3e27bee_1 conda-forge
libgomp 9.3.0 h2828fa1_18 conda-forge
libiconv 1.16 h516909a_0 conda-forge
liblapack 3.8.0 17_openblas conda-forge
liblapacke 3.8.0 17_openblas conda-forge
libnghttp2 1.43.0 h812cca2_0 conda-forge
libopenblas 0.3.10 pthreads_hb3c22a3_5 conda-forge
libpng 1.6.37 h21135ba_2 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libssh2 1.9.0 hab1572f_5 conda-forge
libstdcxx-devel_linux-64 7.5.0 hb016644_18 conda-forge
libstdcxx-ng 9.3.0 h6de172a_18 conda-forge
libtiff 4.2.0 hdc55705_0 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libwebp-base 1.2.0 h7f98852_0 conda-forge
libxcb 1.13 h7f98852_1003 conda-forge
libxml2 2.9.10 h68273f3_2 conda-forge
llvm-openmp 11.0.1 h4bd325d_0 conda-forge
lockfile 0.12.2 py_1 conda-forge
lz4 3.1.3 py36h9b37a58_0 conda-forge
lz4-c 1.9.3 h9c3ff4c_0 conda-forge
mafft 7.475 h516909a_0 bioconda
make 4.3 hd18ef5c_1 conda-forge
markupsafe 1.1.1 py36h8f6f2f9_3 conda-forge
matplotlib 3.2.2 1 conda-forge
matplotlib-base 3.2.2 py36h5fdd944_1 conda-forge
mistune 0.8.4 py36h8f6f2f9_1003 conda-forge
more-itertools 8.7.0 pyhd8ed1ab_0 conda-forge
msgpack-python 1.0.2 py36h605e78d_1 conda-forge
natsort 7.1.1 pyhd8ed1ab_0 conda-forge
nbclient 0.5.2 pyhd8ed1ab_0 conda-forge
nbconvert 6.0.7 py36h5fab9bb_3 conda-forge
nbformat 5.1.2 pyhd8ed1ab_1 conda-forge
ncurses 6.2 h58526e2_4 conda-forge
nest-asyncio 1.4.3 pyhd8ed1ab_0 conda-forge
networkx 2.5 py_0 conda-forge
nose 1.3.7 py_1006 conda-forge
notebook 6.2.0 py36h5fab9bb_0 conda-forge
numpy 1.19.5 py36h2aa4a07_1 conda-forge
olefile 0.46 pyh9f0ad1d_1 conda-forge
openjdk 11.0.8 hacce0ff_0 conda-forge
openssl 1.1.1j h7f98852_0 conda-forge
packaging 20.9 pyh44b312d_0 conda-forge
pandas 1.1.5 py36h284efc9_0 conda-forge
pandoc 2.11.4 h7f98852_0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
pango 1.42.4 h69149e4_5 conda-forge
parso 0.7.1 pyh9f0ad1d_0 conda-forge
patsy 0.5.1 py_0 conda-forge
pcre 8.44 he1b5a44_0 conda-forge
pcre2 10.35 h032f7d1_2 conda-forge
perl 5.26.2 h36c2ea0_1008 conda-forge
perl-app-cpanminus 1.7044 pl526_1 bioconda
perl-archive-tar 2.32 pl526_0 bioconda
perl-base 2.23 pl526_1 bioconda
perl-business-isbn 3.004 pl526_0 bioconda
perl-business-isbn-data 20140910.003 pl526_0 bioconda
perl-carp 1.38 pl526_3 bioconda
perl-common-sense 3.74 pl526_2 bioconda
perl-compress-raw-bzip2 2.087 pl526he1b5a44_0 bioconda
perl-compress-raw-zlib 2.087 pl526hc9558a2_0 bioconda
perl-constant 1.33 pl526_1 bioconda
perl-data-dumper 2.173 pl526_0 bioconda
perl-digest-hmac 1.03 pl526_3 bioconda
perl-digest-md5 2.55 pl526_0 bioconda
perl-encode 2.88 pl526_1 bioconda
perl-encode-locale 1.05 pl526_6 bioconda
perl-exporter 5.72 pl526_1 bioconda
perl-exporter-tiny 1.002001 pl526_0 bioconda
perl-extutils-makemaker 7.36 pl526_1 bioconda
perl-file-listing 6.04 pl526_1 bioconda
perl-file-path 2.16 pl526_0 bioconda
perl-file-temp 0.2304 pl526_2 bioconda
perl-html-parser 3.72 pl526h6bb024c_5 bioconda
perl-html-tagset 3.20 pl526_3 bioconda
perl-html-tree 5.07 pl526_1 bioconda
perl-http-cookies 6.04 pl526_0 bioconda
perl-http-daemon 6.01 pl526_1 bioconda
perl-http-date 6.02 pl526_3 bioconda
perl-http-message 6.18 pl526_0 bioconda
perl-http-negotiate 6.01 pl526_3 bioconda
perl-io-compress 2.087 pl526he1b5a44_0 bioconda
perl-io-html 1.001 pl526_2 bioconda
perl-io-socket-ssl 2.066 pl526_0 bioconda
perl-io-zlib 1.10 pl526_2 bioconda
perl-json 4.02 pl526_0 bioconda
perl-json-xs 2.34 pl526h6bb024c_3 bioconda
perl-libwww-perl 6.39 pl526_0 bioconda
perl-list-moreutils 0.428 pl526_1 bioconda
perl-list-moreutils-xs 0.428 pl526_0 bioconda
perl-lwp-mediatypes 6.04 pl526_0 bioconda
perl-lwp-protocol-https 6.07 pl526_4 bioconda
perl-mime-base64 3.15 pl526_1 bioconda
perl-mozilla-ca 20180117 pl526_1 bioconda
perl-net-http 6.19 pl526_0 bioconda
perl-net-ssleay 1.88 pl526h90d6eec_0 bioconda
perl-ntlm 1.09 pl526_4 bioconda
perl-parent 0.236 pl526_1 bioconda
perl-pathtools 3.75 pl526h14c3975_1 bioconda
perl-scalar-list-utils 1.52 pl526h516909a_0 bioconda
perl-socket 2.027 pl526_1 bioconda
perl-storable 3.15 pl526h14c3975_0 bioconda
perl-test-requiresinternet 0.05 pl526_0 bioconda
perl-time-local 1.28 pl526_1 bioconda
perl-try-tiny 0.30 pl526_1 bioconda
perl-types-serialiser 1.0 pl526_2 bioconda
perl-uri 1.76 pl526_0 bioconda
perl-www-robotrules 6.02 pl526_3 bioconda
perl-xml-namespacesupport 1.12 pl526_0 bioconda
perl-xml-parser 2.44_01 pl526ha1d75be_1002 conda-forge
perl-xml-sax 1.02 pl526_0 bioconda
perl-xml-sax-base 1.09 pl526_0 bioconda
perl-xml-sax-expat 0.51 pl526_3 bioconda
perl-xml-simple 2.25 pl526_1 bioconda
perl-xsloader 0.24 pl526_0 bioconda
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pigz 2.5 h27826a3_0 conda-forge
pillow 8.1.0 py36ha6010c0_2 conda-forge
pip 21.0.1 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
pluggy 0.13.1 py36h5fab9bb_4 conda-forge
prometheus_client 0.9.0 pyhd3deb0d_0 conda-forge
prompt-toolkit 3.0.16 pyha770c72_0 conda-forge
psutil 5.8.0 py36h8f6f2f9_1 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
py 1.10.0 pyhd3deb0d_0 conda-forge
pycparser 2.20 pyh9f0ad1d_2 conda-forge
pygments 2.8.0 pyhd8ed1ab_0 conda-forge
pyopenssl 20.0.1 pyhd8ed1ab_0 conda-forge
pyparsing 2.4.7 pyh9f0ad1d_0 conda-forge
pyrsistent 0.17.3 py36h8f6f2f9_2 conda-forge
pysocks 1.7.1 py36h5fab9bb_3 conda-forge
pytest 6.2.2 py36h5fab9bb_0 conda-forge
python 3.6.13 hffdb5ce_0_cpython conda-forge
python-dateutil 2.8.1 py_0 conda-forge
python-isal 0.5.0 py36h8f6f2f9_0 conda-forge
python_abi 3.6 1_cp36m conda-forge
pytz 2021.1 pyhd8ed1ab_0 conda-forge
pyyaml 5.4.1 py36h8f6f2f9_0 conda-forge
pyzmq 22.0.3 py36h7068817_1 conda-forge
q2-alignment 2021.2.0 py36_0 qiime2/label/r2021.2
q2-composition 2021.2.0 py36_0 qiime2/label/r2021.2
q2-cutadapt 2021.2.0 py36_0 qiime2/label/r2021.2
q2-dada2 2021.2.0 py36_0 qiime2/label/r2021.2
q2-deblur 2021.2.0 py36_0 qiime2/label/r2021.2
q2-demux 2021.2.0 py36_0 qiime2/label/r2021.2
q2-diversity 2021.2.0 py36_0 qiime2/label/r2021.2
q2-diversity-lib 2021.2.0 0 qiime2/label/r2021.2
q2-emperor 2021.2.0 py36_0 qiime2/label/r2021.2
q2-feature-classifier 2021.2.0 py36_0 qiime2/label/r2021.2
q2-feature-table 2021.2.0 py36_0 qiime2/label/r2021.2
q2-fragment-insertion 2021.2.0 py36_0 qiime2/label/r2021.2
q2-gneiss 2021.2.0 py36_0 qiime2/label/r2021.2
q2-longitudinal 2021.2.0 py36_0 qiime2/label/r2021.2
q2-metadata 2021.2.0 py36_0 qiime2/label/r2021.2
q2-phylogeny 2021.2.0 py36_0 qiime2/label/r2021.2
q2-quality-control 2021.2.0 py36_0 qiime2/label/r2021.2
q2-quality-filter 2021.2.0 py36_0 qiime2/label/r2021.2
q2-sample-classifier 2021.2.0 py36_0 qiime2/label/r2021.2
q2-taxa 2021.2.0 py36_0 qiime2/label/r2021.2
q2-types 2021.2.0 py36_0 qiime2/label/r2021.2
q2-vsearch 2021.2.0 py36_0 qiime2/label/r2021.2
q2cli 2021.2.0 py36_0 qiime2/label/r2021.2
q2templates 2021.2.0 py36_0 qiime2/label/r2021.2
qiime2 2021.2.0 py36_0 qiime2/label/r2021.2
r-assertthat 0.2.1 r40h6115d3f_2 conda-forge
r-backports 1.2.1 r40hcfec24a_0 conda-forge
r-base 4.0.2 he766273_1 conda-forge
r-bh 1.75.0_0 r40hc72bb7e_0 conda-forge
r-bitops 1.0_6 r40hcdcec82_1004 conda-forge
r-brio 1.1.1 r40hcfec24a_0 conda-forge
r-callr 3.5.1 r40h142f84f_0 conda-forge
r-cli 2.3.1 r40hc72bb7e_0 conda-forge
r-cluster 2.1.0 r40h31ca83e_4 conda-forge
r-colorspace 2.0_0 r40h9e2df91_0 conda-forge
r-crayon 1.4.1 r40hc72bb7e_0 conda-forge
r-desc 1.2.0 r40h6115d3f_1003 conda-forge
r-diffobj 0.3.3 r40hcfec24a_0 conda-forge
r-digest 0.6.27 r40h1b71b39_0 conda-forge
r-ellipsis 0.3.1 r40hcdcec82_0 conda-forge
r-evaluate 0.14 r40h6115d3f_2 conda-forge
r-fansi 0.4.2 r40hcfec24a_0 conda-forge
r-farver 2.0.3 r40h0357c0b_1 conda-forge
r-formatr 1.7 r40h6115d3f_2 conda-forge
r-futile.logger 1.4.3 r40h6115d3f_1003 conda-forge
r-futile.options 1.0.1 r40h6115d3f_1002 conda-forge
r-ggplot2 3.3.3 r40hc72bb7e_0 conda-forge
r-glue 1.4.2 r40hcfec24a_0 conda-forge
r-gtable 0.3.0 r40h6115d3f_3 conda-forge
r-hwriter 1.3.2 r40h6115d3f_1003 conda-forge
r-isoband 0.2.3 r40h03ef668_0 conda-forge
r-jpeg 0.1_8.1 r40hcdcec82_1 conda-forge
r-jsonlite 1.7.2 r40hcfec24a_0 conda-forge
r-labeling 0.4.2 r40h142f84f_0 conda-forge
r-lambda.r 1.2.4 r40h6115d3f_1 conda-forge
r-lattice 0.20_41 r40hcfec24a_3 conda-forge
r-latticeextra 0.6_29 r40h6115d3f_1 conda-forge
r-lifecycle 1.0.0 r40hc72bb7e_0 conda-forge
r-magrittr 2.0.1 r40hcfec24a_1 conda-forge
r-mass 7.3_53.1 r40hcfec24a_0 conda-forge
r-matrix 1.3_2 r40he454529_0 conda-forge
r-matrixstats 0.58.0 r40hcfec24a_0 conda-forge
r-mgcv 1.8_34 r40he454529_0 conda-forge
r-munsell 0.5.0 r40h6115d3f_1003 conda-forge
r-nlme 3.1_150 r40h31ca83e_0 conda-forge
r-permute 0.9_5 r40h6115d3f_3 conda-forge
r-pillar 1.5.0 r40hc72bb7e_0 conda-forge
r-pkgbuild 1.2.0 r40hc72bb7e_0 conda-forge
r-pkgconfig 2.0.3 r40h6115d3f_1 conda-forge
r-pkgload 1.2.0 r40h03ef668_0 conda-forge
r-plyr 1.8.6 r40h0357c0b_1 conda-forge
r-png 0.1_7 r40hcdcec82_1004 conda-forge
r-praise 1.0.0 r40h6115d3f_1004 conda-forge
r-prettyunits 1.1.1 r40h6115d3f_1 conda-forge
r-processx 3.4.5 r40hcfec24a_0 conda-forge
r-ps 1.5.0 r40hcfec24a_0 conda-forge
r-r6 2.5.0 r40hc72bb7e_0 conda-forge
r-rcolorbrewer 1.1_2 r40h6115d3f_1003 conda-forge
r-rcpp 1.0.6 r40h03ef668_0 conda-forge
r-rcppparallel 5.0.2 r40h0357c0b_0 conda-forge
r-rcurl 1.98_1.2 r40hcdcec82_1 conda-forge
r-rematch2 2.1.2 r40h6115d3f_1 conda-forge
r-reshape2 1.4.4 r40h0357c0b_1 conda-forge
r-rlang 0.4.10 r40hcfec24a_0 conda-forge
r-rprojroot 2.0.2 r40hc72bb7e_0 conda-forge
r-rstudioapi 0.13 r40hc72bb7e_0 conda-forge
r-scales 1.1.1 r40h6115d3f_0 conda-forge
r-snow 0.4_3 r40h6115d3f_1002 conda-forge
r-stringi 1.5.3 r40hca8494e_0 conda-forge
r-stringr 1.4.0 r40h6115d3f_2 conda-forge
r-testthat 3.0.2 r40h03ef668_0 conda-forge
r-tibble 3.0.6 r40hcfec24a_0 conda-forge
r-utf8 1.1.4 r40hcdcec82_1003 conda-forge
r-vctrs 0.3.6 r40hcfec24a_0 conda-forge
r-vegan 2.5_6 r40hc3f0d1c_3 conda-forge
r-viridislite 0.3.0 r40h6115d3f_1003 conda-forge
r-waldo 0.2.4 r40hc72bb7e_0 conda-forge
r-withr 2.4.1 r40hc72bb7e_0 conda-forge
r-zeallot 0.1.0 r40h6115d3f_1002 conda-forge
raxml 8.2.12 h516909a_2 bioconda
readline 8.0 he28a2e2_2 conda-forge
requests 2.25.1 pyhd3deb0d_0 conda-forge
samtools 1.11 h6270b1f_0 bioconda
scikit-bio 0.5.6 py36ha112f06_4 conda-forge
scikit-learn 0.23.1 py36h0e1014b_0 conda-forge
scipy 1.5.3 py36h976291a_0 conda-forge
seaborn 0.11.1 hd8ed1ab_1 conda-forge
seaborn-base 0.11.1 pyhd8ed1ab_1 conda-forge
sed 4.8 he412f7d_0 conda-forge
send2trash 1.5.0 py_0 conda-forge
sepp 4.3.10 py36heb1dbbb_2 bioconda
setuptools 49.6.0 py36h5fab9bb_3 conda-forge
sina 1.7.2 h9aa86b4_0 bioconda
six 1.15.0 pyh9f0ad1d_0 conda-forge
sortmerna 2.0 he860b03_4 bioconda
sqlite 3.34.0 h74cdb3f_0 conda-forge
statsmodels 0.12.2 py36h92226af_0 conda-forge
sysroot_linux-64 2.12 h77966d4_13 conda-forge
tbb 2020.2 h4bd325d_3 conda-forge
terminado 0.9.2 py36h5fab9bb_0 conda-forge
testpath 0.4.4 py_0 conda-forge
threadpoolctl 2.1.0 pyh5ca1d4c_0 conda-forge
tk 8.6.10 h21135ba_1 conda-forge
tktable 2.10 hb7b940f_3 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tornado 6.1 py36h8f6f2f9_1 conda-forge
traitlets 4.3.3 py36h9f0ad1d_1 conda-forge
typing_extensions 3.7.4.3 py_0 conda-forge
tzlocal 2.1 pyh9f0ad1d_0 conda-forge
unifrac 0.20.2 py36hf0b53f7_0 bioconda
urllib3 1.26.3 pyhd8ed1ab_0 conda-forge
vsearch 2.7.0 1 bioconda
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.36.2 pyhd3deb0d_0 conda-forge
widgetsnbextension 3.5.1 py36h5fab9bb_4 conda-forge
xopen 1.1.0 py36h5fab9bb_1 conda-forge
xorg-fixesproto 5.0 h14c3975_1002 conda-forge
xorg-inputproto 2.3.2 h7f98852_1002 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h516909a_0 conda-forge
xorg-libsm 1.2.3 h84519dc_1000 conda-forge
xorg-libx11 1.6.12 h516909a_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxfixes 5.0.3 h516909a_1004 conda-forge
xorg-libxi 1.7.10 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-libxtst 1.2.3 h516909a_1002 conda-forge
xorg-recordproto 1.14.2 h516909a_1002 conda-forge
xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.5 h516909a_1 conda-forge
yaml 0.2.5 h516909a_0 conda-forge
zeromq 4.3.4 h9c3ff4c_0 conda-forge
zipp 3.4.0 py_0 conda-forge
zlib 1.2.11 h516909a_1010 conda-forge
zstd 1.4.8 ha95c52a_1 conda-forge
Thank you.
