Hi,
I’m having trouble running q2-SCNIC at the finding modules step and I hope you guys could help.
Below is my command and the error message:
(qiime2-2018.6) [lunguyen@titan3 ~]$ cd /data/lunguyen/Allie
(qiime2-2018.6) [lunguyen@titan3 Allie]$ qiime SCNIC sparcc-filter \
> --i-table juice-table.qza \
> --o-table-filtered scnic-juice-table.qza
QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment.
Saved FeatureTable[Frequency] to: scnic-juice-table.qza
(qiime2-2018.6) [lunguyen@titan3 Allie]$ qiime SCNIC calculate-correlations \
> --i-table scnic-juice-table.qza \
> --p-method sparcc \
> --o-correlation-table scnic-juice_correls.qza
Saved PairwiseFeatureData to: scnic-juice_correls.qza
(qiime2-2018.6) [lunguyen@titan3 Allie]$ qiime SCNIC make-modules-on-correlations \
> --i-correlation-table scnic-juice_correls.qza \
> --i-feature-table juice-table.qza \
> --p-min-r .35 \
> --o-collapsed-table juice-table.collapsed.qza \
> --o-correlation-network scnic-juice_net.modules.qza \
> --o-module-membership scnic-juice_membership.qza
Plugin error from SCNIC:
module ‘SCNIC.module_analysis’ has no attribute ‘make_modules’
Debug info has been saved to /tmp/qiime2-q2cli-err-ue5h8gz5.log
Allie.