Perfect! Just gives more control over your reference database.
I have a small (!) concern regarding edit taxonomy.
I trained Silva database for V3-V4 region using Rescript and observed many misannotations as you give example above "edit taxonomy" part. I am a bit scared to manually edit each single of them every single time I did a taxonomic assignment. I am working on the marine environment. Do you think preparing a single search and replacement metadata file can be used in different projects or every time I got new data I should prepare a new metadata file to edit taxonomy? I just could not foresee if taxonomic assignment mistakes will be approximately the same or not. If you catch approximately more than 500 ASVs in each project, then editing might be painful each time.
Thanks for the great tool!!!