Looking for V1-V3 (27F-534R) classifier

Hi all, I am analyzing skin microbiome data.
The PCR was done with 27F-534R primers. The sequencing run was done using a V3 kit (600 cycles) to generate 2x300 bp PE reads. I am looking for a matching trained classifier.

Thank you!

Hello @Meiti,

Welcome to the forums! :qiime2:

The Qiime2 team ships trained classifiers for V4 and full length 16S amplicons on the data-resources page, but like you have already noticed, there is not one provided for V1-V3.

But no worries, you can train this classifier yourself using the RESCRIPt plugin.

Let us know if you have any questions about running this plugin!


1 Like

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.