Large portion of Cyanobacteria

[SoilRotifer (Mike Robeson)]

Hi @Sabrin,

Everything looks fine to me. However, know that GenBank and SILVA use slightly different taxonomic nomenclature and also use different prefixes. Prior to merging the taxonomy, you'll likely want to run rescript edit taxonomy ... as I've described here:

DADA2 and Deblur outputs are extremely different

Yes there is. You should be able to follow one of these tutorials: https://forum.qiime2.org/t/using-rescript-to-compile-sequence-databases-and-taxonomy-classifiers-from-ncbi-genbank/15947 From here you should be able to run qiime feature-table merge-taxa... and qiime feature-table merge-seqs ... to combine the GenBank and SILVA data. Note that, prior to merging, there is a chance you'd have to run qiime rescript edit-taxonomy ... on the fetched NCBI taxonomy data to change the k__ prefixes t…

-Mike